BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328082
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36860.1 | Symbols: | LIM domain-containing protein | chr4:... 2778 0.0
> AT4G36860.1 | Symbols: | LIM domain-containing protein | chr4:17358438-17361978
REVERSE LENGTH=2127
Length=2127
Score = 2778 bits (1504), Expect = 0.0
Identities = 1622/1677 (97%), Gaps = 15/1677 (1%)
Strand=Plus/Plus
Query 1 ATGGGGTGGCTAACTAAAATCCTTAAAGGTTCTAGCCATAAGTTTTCGGATGGACAATGT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 324 ATGGGGTGGCTAACTAAAATCCTTAAAGGTTCTAGCCATAAGTTTTCTGATGGACAATGT 383
Query 61 AATGGAAGATATAGAGAGGATAGAAACTTGGAAGGTCCTCGTTATTCTGCGGAAGGATCT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 AATGGAAGATATAGAGAAGATAGAAACTTGGAAGGTCCTCGTTATTCTGCGGAAGGATCT 443
Query 121 GATTTTGACAAAGAAGAGATTGAATGTGCTATTGCACTCTCTCTTTCTGAACAAGAACAT 180
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 444 GATTTTGACAAAGAGGAGATTGAATGTGCTATTGCACTTTCTCTTTCTGAACAAGAACAT 503
Query 181 GTAATTCCACAAGATGACAAAGGAAAGAAAGTAATCGAGTACAAATCTGAAACCGAAGAA 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 504 GTAATTCCACAAGATGACAAAGGAAAGAAAATAATCGAGTACAAATCTGAAACCGAAG-A 562
Query 241 GATGATGACGATGAGGATGAGGATGAAGATGAAGAATTCATGAGAGCTCAGCTTGAGGCA 300
| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| || |||
Sbjct 563 -A-GATGACGATGACGATGAGGATGAGGATGAAGAATACATGAGAGCTCAGCTAGAAGCA 620
Query 301 GCAGAAGAAGAGGAAAGACGGGTAGCTCAAGCTCAAATCGAGGAAGAAGAGAAAAGGAGA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GCAGAGGAAGAGGAAAGACGGGTAGCTCAAGCTCAAATCGAGGAAGAAGAGAAAAGGAGA 680
Query 361 GCTGAAGCTCAACTAGAAGAAATAGAGAAACAGCTTGCAAAAGCTCGATTAGAAGAGGAA 420
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 681 GCTGAAGCTCAACTAGAAGAAACAGAGAAACTGCTTGCAAAAGCTCGATTAGAAGAGGAA 740
Query 421 GAAATGAGGCGTTCTAAAGCCCAATTGGAGGAAGATGAGCAACTCGCCAAGGCCATTCAA 480
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 741 GAAATGAGGCGTTCTAAAGCCCAACTGGAGGAAGATGAGCTACTCGCCAAGGCCCTTCAA 800
Query 481 GAAAGTATGAATGTGGGATCTCCTCCTCGATATGATCTAGGAAATATACTTCAACCATAT 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 801 GAAAGTATGAATGTGGGATCTCCTCCTCGATATGATCCAGGAAATATACTTCAACCATAT 860
Query 541 CCCTTCCTCATTCCATCTAGTCACGGGATATGCGCCGGTTGCCAAGCTGAGATTGGACAT 600
|||||||||||||| ||||||||| ||||||| | |||||||||||||||||| ||||||
Sbjct 861 CCCTTCCTCATTCCTTCTAGTCACAGGATATGTGTCGGTTGCCAAGCTGAGATAGGACAT 920
Query 601 GGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCCATGCA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 921 GGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCA 980
Query 661 TGTGATAAGCCCATCATAGATTATGAGTTCTCAATGTCGGGAAATCGGCCTTATCACAAA 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 981 TGTGATAAGCCCATCATAGATTATGAGTTCTCAATGTCAGGAAATCGGCCTTATCACAAA 1040
Query 721 TTATGTTACAAGGAGCAGCATCATCCTAAATGTGATGTTTGCCATAATTTTATTCCGACA 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1041 TTATGTTACAAGGAGCAGCATCATCCTAAATGTGATGTTTGCCATAACTTTATTCCGACA 1100
Query 781 AATCCAGCTGGTCTTATTGAGTATAGGGCACATCCCTTTTGGATGCAAAAGTATTGTCCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AATCCAGCTGGTCTTATTGAGTATAGGGCACATCCCTTTTGGATGCAAAAGTATTGTCCT 1160
Query 841 TCACATGAGCGTGATGGAACTCCTCGGTGCTGCAGTTGTGAGCGAATGGAGCCAAAAGAT 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1161 TCACATGAGCGTGATGGAACTCCTCGGTGTTGCAGTTGTGAGCGAATGGAGCCAAAAGAT 1220
Query 901 ACAAAATATCTCATTCTTGATGATGGTCGAAAACTGTGTCTTGAATGTCTCGACTCAGCC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 ACAAAATATCTCATTCTTGATGATGGTCGAAAACTGTGTCTTGAATGTCTCGACTCAGCC 1280
Query 961 ATTATGGACACTCATGAATGCCAACCATTGTACCTTGAGATACGTGAATTTTACGAAGGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 ATTATGGACACTCATGAATGCCAACCATTGTACCTTGAGATACGTGAATTTTACGAAGGC 1340
Query 1021 TTACACATGAAAGTGGAACAGCAAATTCCTATGCTGTTGGTGGAGAGATCAGCTCTAAAC 1080
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1341 TTACATATGAAAGTGGAACAGCAAATTCCTATGCTTTTGGTGGAGAGATCAGCTCTAAAC 1400
Query 1081 GAAGCTATGGAAGGAGAGAAACACGGACATCATCATTTACCTGAAACTAGAGGACTTTGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GAAGCTATGGAAGGAGAGAAACACGGACATCATCATTTACCTGAAACTAGAGGACTTTGT 1460
Query 1141 TTGTCTGAAGAACAAACTGTCACCACGGTGTTAAGGAGACCAAGAATTGGGGCAGGCTAC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TTGTCTGAAGAACAAACTGTCACCACGGTGTTAAGGAGACCAAGAATTGGGGCAGGCTAC 1520
Query 1201 AAGTTAATAGACATGATCACAGAGCCTTGCAGGCTGATACGCCGTTGTGAAGTCACTGCG 1260
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1521 AAGTTAATAGACATGATCACAGAGCCTTGCAGGCTGATACGTCGTTGTGAAGTCACTGCG 1580
Query 1261 ATTCTCATTTTATATGGACTTCCTCGTTTATTAACTGGGTCAATCCTTGCTCATGAGATG 1320
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1581 ATTCTCATTTTATATGGACTTCCTCGTTTGTTAACCGGGTCAATCCTTGCTCATGAGATG 1640
Query 1321 ATGCATGCGTGGCTTCGACTAAATGGGTATCCAAATCTTAGACCAGAAGTGGAAGAAGGG 1380
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 ATGCATGCATGGCTTCGACTAAATGGGTATCCAAATCTTAGACCAGAAGTGGAAGAAGGA 1700
Query 1381 ATCTGTCAGGTTTTAGCTCACATGTGGCTGGAATCTGAGACTTATGCTGGCTCTACATTA 1440
|| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1701 ATATGTCAAGTTTTAGCACACATGTGGTTGGAATCTGAGACTTATGCTGGCTCTACATTA 1760
Query 1441 GTAGATATCGCATCGTCTTCTTCCTCATCATCATCATCGGCTGTGGTGTCAGTATCGTCG 1500
||||| |||||||| | | |||| |||||| | | |||||||||||| ||||||
Sbjct 1761 GTAGACATCGCATC-T-T-CTTC---ATCATC-T----G-CTGTGGTGTCAGCATCGTCC 1808
Query 1501 AAGAAAGGTGAGAGGTCTGATTTTGAGAAGAAACTTGGTGAGTTTTTCAAGCATCAAATC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 AAGAAAGGTGAGAGGTCTGATTTTGAGAAGAAACTTGGTGAGTTTTTCAAGCATCAAATC 1868
Query 1561 GAGTCGGATTCTTCATCGGCATATGGGGATGGGTTCAGGCAAGGTAACCAAGCAGTTCTT 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 GAGTCGGATTCTTCATCGGCATATGGGGATGGGTTCAGGCAAGGTAACCAAGCAGTTCTT 1928
Query 1621 AAGCATGGTCTGAGGCGAACCCTCGACCATATTCGCTTGACCGGTACATTTCCTTAA 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 AAGCATGGTCTGAGGCGAACCCTCGACCATATTCGCTTGACCGGTACATTTCCTTAA 1985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5