BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328084
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36840.1 | Symbols: | Galactose oxidase/kelch repeat superf... 983 0.0
> AT4G36840.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:17351353-17352945 FORWARD LENGTH=1593
Length=1593
Score = 983 bits (532), Expect = 0.0
Identities = 659/721 (91%), Gaps = 5/721 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCTTTGTAGACGGGAAGATCTATGTTTTT 60
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 814 ATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCCTCATAGACGGGAAGATCTACGTTTTT 873
Query 61 GGAGGGTGCCGAGAGGACGCTGATTCCTCAAACTGGGCGGAGGTATTCGATCCAATTTAC 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 874 GGAGGGTGCCCAGAGGACGCTGATTCCTCAAACTGGGCGGAGGTATTCGATCCAGTTTAC 933
Query 121 CAAACTTGGGGTAAATTTAATACGCCGAAGATGGCCCATAATATCAACCAAAGTGTAGTA 180
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 934 CAAACTTGGGGTATATTTAATACGCCGAAGATGGCCCATAGTATCAACCAAAGTGTGGTG 993
Query 181 ATAGAGGAGAAGAAGGTTTATTCCGTGGATGAGGATGATCAAAGCTTCAACTTCTTGCCA 240
|||||||||||||||||||| ||||||||||||| || |||||||| | ||||||||||
Sbjct 994 ATAGAGGAGAAGAAGGTTTACGCCGTGGATGAGGAGGACCAAAGCTTTAGCTTCTTGCCA 1053
Query 241 AGTGAAGGTAGATTATGGAAAAGAGGaaaaaaaGATTCAAAGCTAGGAAGTAGAAACGAT 300
|||||||||||| | |||||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct 1054 AGTGAAGGTAGAATCTGGAAAAGCGGAAAAAAAGATTCTAAGGTAGGAAGTAGACACGAT 1113
Query 301 TGGTGTGTCACTGGGAAATTGTTATACTGTCGTGGTGGTACTCGCGGTAGAATACTATGG 360
|||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1114 TGGTGTGTCATTGGGAAATTACTATACTGTCGTGCT---ACTCGCGGTAGAATACTATGG 1170
Query 361 TGTCAACCAGATGAGTTGGATTGGAAGGAGGTCAAAGGTTTGGAAGAGCTACAGTTGTAT 420
|| ||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||||
Sbjct 1171 TGCCAACCAGATGAGTTGGACTGGAAAGAGGTAAAAGGTTTGGAACAGCTACAATTGTAT 1230
Query 421 CTCTCTTGTACGAGATACATCTTCAGACGTACCTCGGATAAACGGCCATCAAAGACCCAA 480
|||||| |||| ||||||||||||||||||||||| |||||||| || ||||||||| ||
Sbjct 1231 CTCTCTGGTACAAGATACATCTTCAGACGTACCTCTGATAAACGACCGTCAAAGACC-AA 1289
Query 481 -GTCAAATATGATATTAGCAAACTCTGTACTAACTCTGCTGGGAACATTGTCATCTTCTG 539
||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||| |
Sbjct 1290 CGTCAAATATGATATTAGAAAAATCTCTAGTAACTCTGCTGGGAACATTGTCATCTTCGG 1349
Query 540 GAGCGCACATATTGGAGATTCTGAGAGTATGGATCTTTGGTCTGCCGAGATTTCAATGGA 599
|| ||||||||||||||| ||||| || |||| |||||||||||||||||||| |||||
Sbjct 1350 GAACGCACATATTGGAGACCCTGAGTGTGTGGAGCTTTGGTCTGCCGAGATTTCCATGGA 1409
Query 600 GAGGCGTGAGGGAGGTGAGATTTGGGGGAAGATTGAGTGGTCCAATGCTGTCTTCAAACT 659
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1410 GAGGCGCGAGGGAGGTGAGATTTGGGGGAAGATTGAGTGGTCCAATGTTGTCTTCAAACT 1469
Query 660 TGATCCTCTCTCAAACTCATATAGCCTTAAGGTTTTATTTTCTGCTTCTGTCCGTCTGTG 719
||||||||||||||||||||||||| || | || ||||||||||||||||||| | ||||
Sbjct 1470 TGATCCTCTCTCAAACTCATATAGCGTTGATGTCTTATTTTCTGCTTCTGTCCATTTGTG 1529
Query 720 A 720
|
Sbjct 1530 A 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5