BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328104
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-rela... 2318 0.0
> AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
protein | chr4:17283134-17285599 REVERSE LENGTH=1733
Length=1733
Score = 2318 bits (1255), Expect = 0.0
Identities = 1441/1527 (94%), Gaps = 28/1527 (2%)
Strand=Plus/Plus
Query 1 ATGAAGTGTCCGTACTGTTCATCGGCGCAAGGACGGTGTGCCACCACAAGCTCCGGTAGA 60
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 73 ATGAAGTGTCCGTACTGTTCATCGGCGCAGGGACGGTGTACCACCACGAGCTCCGGTAGA 132
Query 61 TCAATAACGGAGTGCTCATCTTGCGGTCGCGTAATGGAAGAACGTCAGACGCAAAACCAT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 133 TCAATAACGGAGTGCTCATCTTGCGGTCGCGTAATGGAAGAACGACAGACGCAAAACCAC 192
Query 121 CACCTCTTCCATCTCCGAGCCCAAGACACTCCTCTCTGTC-TCGTCACTTCTGATCTCCA 179
|||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||
Sbjct 193 CACCTCTTCCATCTCCGAGCCCAAGACACTCCTCTCTG-CTTAGTCACTTCCGATCTCCA 251
Query 180 AACGGCGGCGCAACCGTCTCCTGAAGACGAGGAAGATCCGTTCGAACCTACTGGATTCAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 252 AACGGCGGCGCAACCGTCTCCTGAAGACGAGGAAGATCCGTTCGAACCTACCGGATTCAT 311
Query 240 CACCGCTTTCTCTACCTGGTCCCTCGAGCCAAGTCCGATCTTCGCTCGGTCCTCCCTCTC 299
||||| |||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 312 TACCGCCTTCTCTACCTGGTCCCTCGAGCCAAGCCCGATTTTCGCTCGCTCTTCCCTCTC 371
Query 300 TTTCGCCGGTCATCTCGCTGAACTCGAACGAACCCTAGAACTCGCTTCGTCTACATCGAA 359
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 372 TTTCTCCGGTCATCTCGCTGAACTCGAACGAACCCTAGAACTCGCTTCGTCAACATCGAA 431
Query 360 TTCGAATTCGTCGACTGTTGTGGTGGATAATCTTAGGGCTTATATGCAGATTATCGATGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TTCGAATTCGTCGACTGTTGTGGTGGATAATCTTAGGGCTTATATGCAGATTATCGATGT 491
Query 420 GGCGTCGATTTTAGGGTTGGATTGCGATATCTCTGAGCATGCTTTCCAGTTGTTTAGGGA 479
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GGCATCGATTTTAGGATTGGATTGCGATATCTCTGAGCATGCTTTCCAGTTGTTTAGGGA 551
Query 480 TTGTTGCTCAGCTACTTGCTTGCGGAACAGAAGCGTTGAAGCTTTAGCCACTGCTTGCCT 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 552 TTGTTGCTCAGCTACTTGCTTGCGAAACAGAAGCGTTGAAGCTTTAGCCACTGCTTGCCT 611
Query 540 TGTTCAAGCTATTAGGGAAGCTCAGGAGCCTAGAACTCTTCAGGAAATCTCCATTGCAGC 599
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 612 TGTTCAAGCTATTAGGGAGGCTCAAGAACCTAGAACTCTTCAGGAAATCTCCATTGCAGC 671
Query 600 CAATGTACAGCAGAAGGAAATTGGGAAGTACATCAAGATTTTAGGAGAAGCTCTACAACT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CAATGTACAGCAGAAGGAAATTGGGAAGTACATCAAGATTTTAGGAGAAGCTCTACAACT 731
Query 660 TAGTCAACCCATCAACAGTAACTCTATATCAGTTCATATGCCAAGATTCTGTACCCTCCT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AAGTCAACCCATCAACAGTAACTCTATATCAGTTCATATGCCAAGATTCTGTACCCTCCT 791
Query 720 CCAGCTTAACAAATCTGCTCAGGAACTAGCAACACATATTGGAGAAGTTGTGATTAACAA 779
|| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 792 TCAACTAAACAAATCTGCTCAGGAACTAGCAACACACATTGGAGAAGTTGTGATCAACAA 851
Query 780 ATGCTTCTGCACCCGTAGAAACCCAATCAGCATTTCTGCAGCTGCAATCTATCTGGCATG 839
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 852 ATGCTTCTGCACCCGTAGAAACCCGATCAGCATTTCTGCAGCTGCTATCTATCTGGCATG 911
Query 840 TCAGCTTGAAGACAAACGAAAGACGCAAGCAGAGATATGTAAAATAACCGGGCTCACTGA 899
||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 912 TCAACTTGAAGACAAGCGAAAGACACAAGCAGAGATATGTAAAATAACCGGACTAACTGA 971
Query 900 GGTAACTCTACGCAAAGTCTATAAGGAACTGCTAGAGAATTGGGACGATCTACTTCCATC 959
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 972 GGTAACTCTACGCAAAGTCTATAAAGAACTGCTAGAGAATTGGGACGATCTACTTCCATC 1031
Query 960 TAACTACACACCAGCTGTGCCACCAGAGAAAGCATTTCCCACAACCACAATCTCCACAAC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TAACTACACACCAGCTGTGCCACCAGAGAAAGCATTTCCCACAACCACAATCTCCACAAC 1091
Query 1020 CCGCTCAACAACTCCTAGAGCCGTGGATCCACCTGAACCTAGTTTCGTGGACAGAGACAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1092 CCGCTCAACAACTCCTAGAGCCGTGGATCCACCTGAACCTAGTTTCGTGGAAAAAGACAA 1151
Query 1080 GCCATCTGTC-AAACCAATGGAAACTTCCGATCATACCTACCAACAACCCAAAGGCAAAG 1138
||| |||| | |||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1152 GCCCTCTG-CGAAACCAATCGAAACTTTCGATCATACCTACCAACAACCGAAAGGCAAAG 1210
Query 1139 AAGAGAAGCAGCCAAAATTCAGACAGCCTTGGCTGTTTGGAACTGCCAGTGTCATGAACC 1198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AAGATAAGCAGCCAAAATTCAGACAGCCTTGGCTGTTTGGAACTGCCAGTGTCATGAACC 1270
Query 1199 CAGGGGAGATGATTAGCGAGCCAGCAAAACCTAATAATATGGACTATGAGAAGCAACAAC 1258
||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1271 CAGCGGAGATGATAAGCGAGCCAGCAAAACCTAATGCTATGGACTATGAAAAGCAACAAC 1330
Query 1259 TCGATAAGCAGCAGC--C-GC---TAGGCGATAAGGAGACATTGCCTATATATCTAAGAC 1312
||||||||||||||| | || ||||||||||||| |||||||||||||||||||||
Sbjct 1331 TCGATAAGCAGCAGCAGCAGCAGCTAGGCGATAAGGAAACATTGCCTATATATCTAAGAG 1390
Query 1313 AACACAACCAATTCCCTTCAAATACATCTCCATCTACAGGTATCAGCACAATCAATTGGT 1372
| || |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1391 ACCATAACCCATTCCCTTCAAATCCATCTCCATCTACAGGTATCAGCACAATCAATTGGT 1450
Query 1373 CATTCCGACCATCTG--GCTCCCCTGGATCTTCCAGCAACTTGCCTGTTGTTCATCCGCC 1430
||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 1451 CATTCCGACCATCTGTTG-TCCCC-GGATCTTCCAGCAACTTGCCTGTTATTCATCCCCC 1508
Query 1431 AAAACTGCCTCCAGGGT-ATGCTGAGATTAGAGGTAGTGGATCTCAAACAGGAAGCAGGA 1489
|||||| ||||| |||| ||||||||||||||||||||||| | | |||||
Sbjct 1509 AAAACTACCTCC-GGGTTATGCTGAGATTAGAGGTAGTGGA----A----G----CAGGA 1555
Query 1490 ATGCTAATAATCCCCATGGAGACTTCT 1516
||||| |||||||||||||||||||||
Sbjct 1556 ATGCTGATAATCCCCATGGAGACTTCT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5