BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328109
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36600.1 | Symbols: | Late embryogenesis abundant (LEA) pro... 1463 0.0
> AT4G36600.1 | Symbols: | Late embryogenesis abundant (LEA) protein
| chr4:17263666-17265100 FORWARD LENGTH=1194
Length=1194
Score = 1463 bits (792), Expect = 0.0
Identities = 976/1060 (92%), Gaps = 32/1060 (3%)
Strand=Plus/Plus
Query 1 ATGATGCTTATGATGGTGCTGATACTGACGTGGCAGAAGCAATGCTATGGATGGGGAACA 60
|||||||||| || |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 10 ATGATGCTTACGACGGTGGTGACGCTGACGTGGCAGAAGCAATGCTATGGATGGGGAACG 69
Query 61 GAGACAGCAGAGGATATGGTTAGAAACGAAGCAGAGCATGCTAAAAA--C-G-C-AG-CC 114
||||||||||||||||||||||||||||||||||||||||||||||| | | | || ||
Sbjct 70 GAGACAGCAGAGGATATGGTTAGAAACGAAGCAGAGCATGCTAAAAACGCAGCCGAGACC 129
Query 115 G---AG---A-------C----C-GCTCATGACACAAAGGAAAAAACCGCCTCTTGGGCT 156
| || | | | ||||||||||||||||| ||||||||||||||||||
Sbjct 130 GCTAAGAAAATGGCGTCCGATGCGGCTCATGACACAAAGGACAAAACCGCCTCTTGGGCT 189
Query 157 GGCTGGGTTTCCGACAAAATTTCCACAGGATTGGGAAGCAAGAAAGATGAGGCAGAAGAA 216
|| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 190 GGTTGGGTTTCCGACAAAATTTCCACAGGATTGGGAGGCAAGAAAGCTGAGGCAGAAGAA 249
Query 217 GCGGCTGAATCTGCGAAGAACTACGCTTATGACAAGGCTGGATCCGCCTATGACAATGTG 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 250 GCGGCTGAATCTGCGAAGAACTACGCTTATGACAAGGCTGGATCCGCCTATGACAATGCG 309
Query 277 GGTTACGCCAAGGACTTTGCATCAGACAAAGCTGGATCTGTTTACGATAGTGCTCAAAAC 336
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 310 GGTTACGCCAAGGACTTTGCATCAGACAAAGCCGGATCTGCTTACGATAGTGCTCATAAC 369
Query 337 GCAAAATATTATGCTTATGATAAGGCTGGTGATGCAAAGGACATAGCCTACGGCAAGGCC 396
|||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||
Sbjct 370 GCAAAACATTATGCTTATGATAAGGCTGGTGATGCAAAAGACATGGCCTACGATAAGACC 429
Query 397 GGTCAAGCTAAGGACATGGCTTACGACAAAGCAGGATCGGCCTATGAAAAGGCCGGTCAA 456
|||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 430 GGTCAAGCCAAGTACATGGCTTACGACAAAGCAGGATCAGCCTACGAAAAGGCCGGTCAA 489
Query 457 GCCAGGGACATGGCCTACGACAAGGCGGGTCAAGCTAAAGATATGGTCTACGACAAGGTG 516
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 490 GCCAAGGACATGGCCTACGACAAGGCGGGTCAAGCTAAAGACATGGCCTACGACAAGGTG 549
Query 517 GGATCAGCCTACGACAAGGCGGGTCAAGCCAAAGCCAAGGACATGGCCTACGACAAAGCA 576
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 550 GGATCAGCCTACGACAAGGCGGGTCAAGCCAA-G----G-ACATGGCCTACGACAAAGCA 603
Query 577 GGATCAGCCTCTGAGAAGGCTGGTCAAGCCAAAGACTTTGCCTACGACAAGGCAGCTCAT 636
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 604 GGATCAGCATCTGAGAAGGCTGGTCAAGCCAAAGACTTTGCCTATGACAAGGCAGCTCAC 663
Query 637 GCAAAAGACGCTGCCTATGACAAAGCAGAGGATGTGATTAAGATGGCTACGGATAAGAGT 696
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 664 GCAAAAGACGCTGCCTATAACAAAGCAGAGGATGTGATTAAGATGGCTACGGATACGAGT 723
Query 697 GGTGAAGCTAAAGATAATGCGTATGGAACATACAAAAGATTCAAAGAAGGGTCTAATAAT 756
|||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 724 GGTGAAGCTAAAGATAGTGCGTATGGAACATACGAAAGATTCAAAGAAGGATCTAAGAAT 783
Query 757 GCTAAAGACATGGAATCGGATAAAGCTCAGGATGTTAGCGAAACCGCAGGACGAGCGATG 816
||||||||||| | ||||||||||||||| |||||||| ||||||||||| |||||| ||
Sbjct 784 GCTAAAGACATTGCATCGGATAAAGCTCACGATGTTAGAGAAACCGCAGGGCGAGCGGTG 843
Query 817 GACTACGCAAAAGACAAAGCAACTGATGCATACGAATCGGGGAGCGAAGCAGC-GAGAAG 875
||||| || ||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 844 GACTATGCTAAAGACAAAGCAAATGATGCATACGAATCGGGGAGCGAAGCAGCCG-GAAG 902
Query 876 ATTCGACGAGGCAATGCATAAGGTTGGGGAGAGGTATGGTGCAGCTAAGGATTCTATGTC 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATTCGACGAGGCAATGCATAAGGTTGGGGAGAGGTATGGTGCAGCTAAGGATTCTATGTC 962
Query 936 GGAGAAGACAAAAGAAGCTTATGAGAGTGCAAAGGAGAAGGCTTCTGATGCTGCTGGAGA 995
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 GGAGAACACAAAAGAAGCTTATGAGAGTGCAAAGGAGAAGGCTTCTGATGCTGCTGGTGA 1022
Query 996 GTACGGCACATATGTAAGAGACCGTAGTGCTGAGCTTTAG 1035
|||||| ||||| | ||||||||||| ||||||||||||
Sbjct 1023 GTACGGTTCATATATGAGAGACCGTAGCGCTGAGCTTTAG 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5