BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg328110 Length=672 Score E Sequences producing significant alignments: (Bits) Value AT4G36590.1 | Symbols: | MADS-box transcription factor family ... 568 3e-161 > AT4G36590.1 | Symbols: | MADS-box transcription factor family protein | chr4:17260937-17262227 REVERSE LENGTH=994 Length=994 Score = 568 bits (307), Expect = 3e-161 Identities = 390/427 (91%), Gaps = 17/427 (4%) Strand=Plus/Plus Query 250 GTGCTGACAACCCAGGAAAAGGAGAAAAATAAGAGAATGGTTTTGGACATAATGAAAGAA 309 |||||| ||| |||||||||||||||| | |||||||||||||||||| || |||||||| Sbjct 372 GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTATTGAAAGAA 431 Query 310 TCCAGAGAACAAAG-AGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 368 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 432 TCCAGAGAAC-AAGTAGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 490 Query 369 AACCAACCATCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGTGAAATGTC 428 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 491 AACCAACCAGCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGAGAAATGTC 550 Query 429 TCAACAATATTCTCAAGTAAATGTTTCTCAGAATTACTTCGGCCAAAGTTCTGGCTTTAT 488 |||| |||||||||||||||||||| ||||||||||| || |||||||||||| | || Sbjct 551 TCAA---TATTCTCAAGTAAATGTTTCGCAGAATTACTTTGGTCAAAGTTCTGGCGTGAT 607 Query 489 TGGTGGTCCTAATGTTGATGTTGGCATTGATCTTTTTGATCAAAGAAGAAATACATTCAA 548 ||||||| |||||||| | |||||||||||||||||||||||||||| ||||||| Sbjct 608 TGGTGGTGGTAATGTTG--G----CATTGATCTTTTTGATCAAAGAAGAAATGCATTCAA 661 Query 549 CTATAATCCAAACATGGCGGTGTTTCCTAACCATACACCA--A-TGTTTGGATACAACAA 605 ||||||||||||||||| ||||||| || ||||||||| | |||||||||||||||| Sbjct 662 CTATAATCCAAACATGG---TGTTTCCCAATCATACACCACCAATGTTTGGATACAACAA 718 Query 606 TGATGGAGTTATCGTTCCGATATCCAACATGAACTATATGTCAAGTTACAACTTCAACCA 665 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 719 TGATGGAGTTCTCGTTCCGATATCCAACATGAACTACATGTCAAGTTACAACTTCAACCA 778 Query 666 GAGCTAG 672 ||||||| Sbjct 779 GAGCTAG 785 Score = 348 bits (188), Expect = 5e-95 Identities = 231/252 (92%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 1 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGaaaaaaatgaaaaaCGAGAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 39 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGAAAAAAATGGAAAACGAAAGC 98 Query 61 AACCTTCAGGTTACTTTCTCGAAAAGAAGCTTTGGTCTTTTCAAAAAAGCTAGTGAACTT 120 |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 99 AACCTTCAGGTTACTTTCTCAAAAAGAAGATTCGGTCTTTTCAAAAAAGCTAGTGAACTT 158 Query 121 TGTACATTATGTGGTGCAGAAATTTTAATGATTGTTTTCTCTCCTGGTGGAAAAGTGTTT 180 || |||||| |||||||||| ||| | ||||||| |||||||||||||| ||||||||| Sbjct 159 TGCACATTAAGTGGTGCAGAGATTCTGTTGATTGTGTTCTCTCCTGGTGGGAAAGTGTTT 218 Query 181 TCTTTTGGCCATCCAAGTGTTCAAGATCTGATTCATCG-TTTTGAGAATCCTAACTATAA 239 |||||||||||||||||||||||||| || |||||||| |||| |||||||||| |||| Sbjct 219 TCTTTTGGCCATCCAAGTGTTCAAGAACTCATTCATCGCTTTTC-GAATCCTAACCATAA 277 Query 240 TTCTATCATTGT 251 |||| |||||| Sbjct 278 TTCTGCCATTGT 289 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32501493109 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5