BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328110
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36590.1 | Symbols: | MADS-box transcription factor family ... 568 3e-161
> AT4G36590.1 | Symbols: | MADS-box transcription factor family
protein | chr4:17260937-17262227 REVERSE LENGTH=994
Length=994
Score = 568 bits (307), Expect = 3e-161
Identities = 390/427 (91%), Gaps = 17/427 (4%)
Strand=Plus/Plus
Query 250 GTGCTGACAACCCAGGAAAAGGAGAAAAATAAGAGAATGGTTTTGGACATAATGAAAGAA 309
|||||| ||| |||||||||||||||| | |||||||||||||||||| || ||||||||
Sbjct 372 GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTATTGAAAGAA 431
Query 310 TCCAGAGAACAAAG-AGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 368
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TCCAGAGAAC-AAGTAGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 490
Query 369 AACCAACCATCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGTGAAATGTC 428
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 491 AACCAACCAGCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGAGAAATGTC 550
Query 429 TCAACAATATTCTCAAGTAAATGTTTCTCAGAATTACTTCGGCCAAAGTTCTGGCTTTAT 488
|||| |||||||||||||||||||| ||||||||||| || |||||||||||| | ||
Sbjct 551 TCAA---TATTCTCAAGTAAATGTTTCGCAGAATTACTTTGGTCAAAGTTCTGGCGTGAT 607
Query 489 TGGTGGTCCTAATGTTGATGTTGGCATTGATCTTTTTGATCAAAGAAGAAATACATTCAA 548
||||||| |||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 608 TGGTGGTGGTAATGTTG--G----CATTGATCTTTTTGATCAAAGAAGAAATGCATTCAA 661
Query 549 CTATAATCCAAACATGGCGGTGTTTCCTAACCATACACCA--A-TGTTTGGATACAACAA 605
||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||
Sbjct 662 CTATAATCCAAACATGG---TGTTTCCCAATCATACACCACCAATGTTTGGATACAACAA 718
Query 606 TGATGGAGTTATCGTTCCGATATCCAACATGAACTATATGTCAAGTTACAACTTCAACCA 665
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 719 TGATGGAGTTCTCGTTCCGATATCCAACATGAACTACATGTCAAGTTACAACTTCAACCA 778
Query 666 GAGCTAG 672
|||||||
Sbjct 779 GAGCTAG 785
Score = 348 bits (188), Expect = 5e-95
Identities = 231/252 (92%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGaaaaaaatgaaaaaCGAGAGC 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 39 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGAAAAAAATGGAAAACGAAAGC 98
Query 61 AACCTTCAGGTTACTTTCTCGAAAAGAAGCTTTGGTCTTTTCAAAAAAGCTAGTGAACTT 120
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 99 AACCTTCAGGTTACTTTCTCAAAAAGAAGATTCGGTCTTTTCAAAAAAGCTAGTGAACTT 158
Query 121 TGTACATTATGTGGTGCAGAAATTTTAATGATTGTTTTCTCTCCTGGTGGAAAAGTGTTT 180
|| |||||| |||||||||| ||| | ||||||| |||||||||||||| |||||||||
Sbjct 159 TGCACATTAAGTGGTGCAGAGATTCTGTTGATTGTGTTCTCTCCTGGTGGGAAAGTGTTT 218
Query 181 TCTTTTGGCCATCCAAGTGTTCAAGATCTGATTCATCG-TTTTGAGAATCCTAACTATAA 239
|||||||||||||||||||||||||| || |||||||| |||| |||||||||| ||||
Sbjct 219 TCTTTTGGCCATCCAAGTGTTCAAGAACTCATTCATCGCTTTTC-GAATCCTAACCATAA 277
Query 240 TTCTATCATTGT 251
|||| ||||||
Sbjct 278 TTCTGCCATTGT 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5