BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328130
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36350.1 | Symbols: ATPAP25, PAP25 | purple acid phosphatase... 2084 0.0
AT1G56360.1 | Symbols: PAP6, ATPAP6 | purple acid phosphatase 6... 1428 0.0
> AT4G36350.1 | Symbols: ATPAP25, PAP25 | purple acid phosphatase
25 | chr4:17173737-17175857 REVERSE LENGTH=1401
Length=1401
Score = 2084 bits (1128), Expect = 0.0
Identities = 1313/1404 (94%), Gaps = 6/1404 (0%)
Strand=Plus/Plus
Query 1 ATGAGGATGAACAAAATTATACTTGTTCTTGTGTTTCTAAGCATTACCACTGTGATCAAT 60
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 1 ATGAGGATGAACAAAATTTTACTTGTTTTTGTGTTTCTAAGCATTGCCACTGTAATCAAT 60
Query 61 GGTGGAACAACAAGCAAATTTTTCCGAAAAGCTCAACCATCAACCGAGATGCCTCTCAAA 120
|||||||||||||||| ||| |||| | ||||||||||||||| |||||| ||||| ||
Sbjct 61 AGTGGAACAACAAGCAACTTTGTCCGCACAGCTCAACCATCAACTGAGATGTCTCTCGAA 120
Query 121 ACTTTTCCATCTCCGGCTGGTCATAATGCTCCTGAACAGGTTCATATCATCCAAGGAGAT 180
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 121 ACTTTTCCATCTCCGGCTGGTCATAATGCTCCGGAACAGGTTCATATCGTCCAAGGAGAT 180
Query 181 TACAATGGACGTGGCATGATCATCTCGTGGGTGACACCGTTAAACCTAGCTGGTTCTAAC 240
|||||||||||||| || ||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 181 TACAATGGACGTGGTATAATCATATCGTGGGTGACCCCCTTAAACCTAGCTGGTTCAAAC 240
Query 241 GTTGTTACTTACTGGAAGGCGGTTAG-CGGAGATGTGAAGTCGGAAAAGAAGAGAGCTCA 299
|| |||||||| |||||||| ||| | || |||||||| || |||||||||||| |||
Sbjct 241 GTGGTTACTTATTGGAAGGCAGTT-GATGGTGATGTGAAACCGAAAAAGAAGAGAGGTCA 299
Query 300 TGCCTCCACGTCGTCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCATGCCAC 359
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TGCCTCTACCTCGTCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCACGCCAC 359
Query 360 CATTAAAGGACTCAAGTACGATACCAAGTACATCTATGAGGTTGGAACAGATGAATCCGT 419
|||||||||||| |||| |||||||| |||||||||||||||||||| |||| ||||||
Sbjct 360 AATTAAAGGACTCGAGTATGATACCAAATACATCTATGAGGTTGGAACTGATGGATCCGT 419
Query 420 TAGGCAATTTTCTTTCACTACACCTCCAAAGGTTGGACCTGATGTTCCATACACATTCGG 479
||| |||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 420 TAGACAATTTTCCTTCACTAGTCCTCCAAAGGTTGGACCTGACGTTCCATACACTTTCGG 479
Query 480 CATCATTGGTGATCTTGGACAAAC-TTATGCTTCTAACGAGACATTATATCATTACATGT 538
||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 480 CATTATTGGTGATCTTGGACAAACTTTA-GCTTCTAACGAGACATTATATCATTACATGT 538
Query 539 CAAACCCTAAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGATCATC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CAAACCCTAAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGACCATC 598
Query 599 CAAACCATGATCAAAGGAAGTGGGATTCTTGGGGAAGATTCGTGGAGCCTTGTGCTGCTT 658
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 CAAACCATGATCAGAGAAAGTGGGATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTT 658
Query 659 ACCAACCCTTCATCTATGCTGCCGGAAATCACGAAATTGATTTTGTCCCAAACATAGGGG 718
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 659 ACCAAACCTTCATCTATGCTGCCGGGAATCACGAAATTGATTTTGTCCCAAACATTGGGG 718
Query 719 AGCCTCATGCCTTCAAGCCCTACACTCACCGTTACCATAACGCCTACAAAGCTTCGAAGA 778
|||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||
Sbjct 719 AGCCTCATGCCTTCAAGCCCTACATTCACCGTTATCATAACGCCTACAAGGCCTCGAAGA 778
Query 779 GCACT-TCTCCTCTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCC 837
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCA-TATCTCCTCTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCC 837
Query 838 TCTTATTCTGCTTACGGAAAATACACACCTCAATATGTGTGGCTCGACCAAGAGTTGAAG 897
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 838 TCTTATTCTGCCTACGGAAAATACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAG 897
Query 898 AAGGTGAACAGAGAAGAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAAT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGGTGAACAGAGAAGAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAAC 957
Query 958 AGTAATAACTACCATTACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAATCATGGTTC 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 958 AGTAATAACTACCATTACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAGTCGTGGTTC 1017
Query 1018 GTTAACAGCAAAGTCGATTTGGTATTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAA 1077
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTTAACAGCAAGGTTGATTTGGTTTTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAA 1077
Query 1078 CGTGTCTCCAATATTAAATATAATATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCT 1137
|||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||
Sbjct 1078 CGTGTCTCCAATATTAAATACAACATCACCAATGGCTTGAGCTATCCTGTGAAAGACCCT 1137
Query 1138 TCAGCCCCGATTTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGT 1197
|| || || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TCTGCTCCAATCTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGT 1197
Query 1198 TTTACTGATCCTCAACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTT 1257
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTTACTGATCCGCAACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTT 1257
Query 1258 TTGCAGATTTTCAATAAAACTCACGCGTTCTACACATGGCACAGGAACCAAGACAATGAA 1317
||| |||||| ||||| ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 1258 TTGGAGATTTACAATAGAACTCACGCATACTACACATGGCATAGGAACCAAGACAATGAA 1317
Query 1318 CCTATTGCAGCTGATTCAATTATGTTGCACAACAGATATTTCTTTCCAGTAGAGGAATTA 1377
||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 CCTGTTGCCGCTGATTCAATTATGTTGCATAACAGATATTTCTTTCCAGTAGAGGAATTA 1377
Query 1378 GTATCTGGCAACATTAGGGCCTAA 1401
| ||||||||||| ||||||||||
Sbjct 1378 GAATCTGGCAACACTAGGGCCTAA 1401
> AT1G56360.1 | Symbols: PAP6, ATPAP6 | purple acid phosphatase
6 | chr1:21098603-21100842 REVERSE LENGTH=1401
Length=1401
Score = 1428 bits (773), Expect = 0.0
Identities = 1190/1391 (86%), Gaps = 29/1391 (2%)
Strand=Plus/Plus
Query 26 TTCTTGTGTTTCTAAGCATTACCACTGTGATCAATGGTGGAACAACAAGCAAATTTTTCC 85
||||||| | | ||||||| || ||||| ||||||||||||| |||||| |||||| |||
Sbjct 25 TTCTTGT-TCT-TAAGCATCACTACTGTAATCAATGGTGGAATAACAAGTAAATTTGTCC 82
Query 86 GAAAAGCTCAACCATCAACCGAGATGCCTCTCAAAACTTTTCCATCTCC-GGCTGGTC-A 143
| ||||| |||||| | ||| ||| ||||| | ||||| || ||||| || ||| | |
Sbjct 83 GCCAAGCTTTACCATCGATCGAAATGTCTCTCGACACTTTCCCTTCTCCTGG-TGG-CTA 140
Query 144 TAATGCTCCTGAACAGGTTCATATCATC-CAAGGAGATTACAATGGACGTGGCATGATCA 202
|| ||||||||||||||||| | | | |||||||| | ||||||||||||||||
Sbjct 141 CAACACTCCTGAACAGGTTCATCTGA-CTCAAGGAGACCATGATGGACGTGGCATGATTG 199
Query 203 TCTCGTGGGTGACACCGTTAAACCTAGCTGGTTCTAACGTTGTTACTTACTGGAAGGCGG 262
|||||||||| |||||||| || || |||||||||||||||||||| ||||||| ||
Sbjct 200 TCTCGTGGGTCACACCGTTGAATCTCGCTGGTTCTAACGTTGTTACCTACTGGATCGCTA 259
Query 263 TTAGCGG-A--GATGTGAAGTC-G-GAAAAGAAGAGAGCTCATGCCTCCACGT-CGTCTT 316
|| || | || || ||| | | | ||| |||||||||||||||||||| | ||||
Sbjct 260 CTAATGGTAGTGACGTAAAGCCAGCG-AAA-AAGAGAGCTCATGCCTCCAC-TAAATCTT 316
Query 317 ACCGATTTTATGACTATACTTCTGGTTTTCTTCATCATGCCACCATTAAAGGACTCAAGT 376
|| |||| |||||||||| ||| || ||||| ||||| ||||| ||||| |||||| |||
Sbjct 317 ACAGATTCTATGACTATAGTTCAGGATTTCTCCATCACGCCACAATTAAGGGACTCGAGT 376
Query 377 ACGATACCAAGTACATCTATGAGGTTGGAACAGATGAATCCGTTAGGCAATTTTCTTTCA 436
|||||||||||||||||||||||||||| || ||| |||||||||| ||||| || ||||
Sbjct 377 ACGATACCAAGTACATCTATGAGGTTGGTACCGATAAATCCGTTAGACAATTCTCCTTCA 436
Query 437 CTACACCTCCAAAGGTTGGACCTGATGTTCCATACACATTCGGCATCATTGGTGATCTTG 496
|||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 437 CTACTCCTCCAAAGATCGGACCCGATGTTCCATACACATTCGGCATCATTGGTGATCTTG 496
Query 497 GACAAACTTATGCTTCTAACGAGACATTATATCATTACATGTCAAACCCTAAAGGCCAAG 556
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 497 GACAGACTTATGCTTCTAATGAGACATTGTATCATTACATGTCAAACCCTAAAGGCCAAG 556
Query 557 CTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGATCATCCAAACCATGATCAAAGGA 616
|||||||||| |||||||||| || || ||||| || || || || ||||| || || |
Sbjct 557 CTGTTCTCTTTGCTGGAGACTTGTCATATGCAGACGACCACCCGAATCATGACCAGAGAA 616
Query 617 AGTGGGATTCTTGGGGAAGATTCGTGGAGCCTTGTGCTGCTTACCAACCCTTCATCTATG 676
|||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 617 AGTGGGATACTTGGGGAAGATTTATGGAGCCTTGTGCTGCTTACCAGCCCTTCATCTTTG 676
Query 677 CTGCCGGAAATCACGAAATTGATTTTGTCCCAAACATAGGGGAGCCTCATGCCTTCAAGC 736
||||||| ||||| |||||||||||||| |||||||| || |||||||| || |||||||
Sbjct 677 CTGCCGGGAATCATGAAATTGATTTTGTTCCAAACATTGGTGAGCCTCACGCATTCAAGC 736
Query 737 CCTACACTCACCGTTACCATAACGCCTACAAAGCTTCG-AAGAGCACTTCTCCTCTTTGG 795
|||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 737 CCTACACTCACCGTTACCCTAACGCCTACAAAGCTTCACAA-AGCACTTCTCCTCTTTGG 795
Query 796 TACTCTATT-AGACGTGCATCTGCTCACATCATCGTCCTCTCCTCTTATTCTGCTTACGG 854
||||| | | |||||||| ||||||||||||||||||||||| ||||| || || |||||
Sbjct 796 TACTC-AGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCGGCCTACGG 854
Query 855 AAAATACACACCTCAATATGTGTGGCTCGACCAAGAGTTGAAGAAGGTGAACAGAGAAGA 914
||||||||| |||||||| | ||||| || |||||| | ||||| ||||||||||||||
Sbjct 855 AAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAAGA 914
Query 915 GACTCCATGGCTT-ATTGTCATGGTTCACTCGCCGTGGTACAATAGTAATAACTACCATT 973
|||||||||| || |||||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct 915 GACTCCATGG-TTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCATT 973
Query 974 ACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAATCATGGTTCGTTAACAGCAAAGTCG 1033
|||||||||||||||||||||||| |||||||| || ||| ||||||||||||| || |
Sbjct 974 ACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTTG 1033
Query 1034 ATTTGGTATTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAACGTGTCTCCAATATTA 1093
||||||| ||||||||||| |||||| ||||||||||||| |||||| ||||||||||||
Sbjct 1034 ATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGAGATCTGAACGTATCTCCAATATTA 1093
Query 1094 AATATAATATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCTTCA-GCCCCGATTTAC 1152
| || || |||||||||||||||||||||||||||||||||||| | || || ||||||
Sbjct 1094 AGTACAACATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCTA-ATGCTCCTATTTAC 1152
Query 1153 ATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGTTTTACTG-ATCCTCA 1211
|| |||||||||||||||||||||||||||||||| ||||| ||||| || |||| ||
Sbjct 1153 ATTACTATCGGAGATGGAGGAAACATTGAAGGAATTGCAAACAGTTTCG-TGGATCCACA 1211
Query 1212 ACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTTTT-GCAGATTTTCA 1270
|||||| || || || |||||||| || |||||||| ||||| ||||| | ||||| | |
Sbjct 1212 ACCGAGTTACTCAGCATATAGAGAGGCGAGTTTTGGCCATGCGGTTTTAG-AGATTATGA 1270
Query 1271 ATAAAACTCACGCGTTCTACACATGGCACAGGAACCAAGACAATGAACCTATTGCAGCTG 1330
||| ||||||||| ||||||||||| |||||||||||||| || ||| | || ||||
Sbjct 1271 ATAGGACTCACGCGCAGTACACATGGCATAGGAACCAAGACAACGAGCCTGTCGCCGCTG 1330
Query 1331 ATTCAATTATGTTGCACAACAGATATTTCTTTCCAGTAGAGGAATTAGTATCTGGCAACA 1390
| || ||||||||||| |||||| | |||||||| || |||||| |||| || ||||||
Sbjct 1331 ACTCTATTATGTTGCATAACAGACACTTCTTTCCGGTGGAGGAAATAGTTTCCAGCAACA 1390
Query 1391 TTAGGGCCTAA 1401
|||||||||||
Sbjct 1391 TTAGGGCCTAA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5