BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328137

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36210.3 | Symbols:  | Protein of unknown function (DUF726) ...   514    2e-145


> AT4G36210.3 | Symbols:  | Protein of unknown function (DUF726) 
| chr4:17130246-17134656 FORWARD LENGTH=2481
Length=2481

 Score =  514 bits (278),  Expect = 2e-145
 Identities = 329/353 (93%), Gaps = 5/353 (1%)
 Strand=Plus/Minus

Query  25   AGATCACCTGAAAACGGGTCGAAGAAGGCTAGACGTCTCGTGTACCCAAAGGCTGGGGTC  84
            ||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct  353  AGA-CATCTGAAAACGGGGCGAAGAAGGCCAGACGTCTCGTGTACCCAAAGGCTGGGGTC  295

Query  85   ATCGGAGACAGAATCTCCGCTACTGCAATTGCTTCTTCGCTCTTCATCGCCTCCGTCGTC  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  ATCGGAGACAGAATCTCCGCTACTGCAATTGCTTCTTCGCTCTTCATCGCCTCCGTCGTC  235

Query  145  GTCTTCCGCCGCTGGGATTCCCAGCGGCTGAGTCTGGTTGATTTGTGCTTGGTTGAGCGC  204
            |||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |  ||
Sbjct  234  GTCTTCCGCCGCCGGGGTTCCCAGCGGCTGAGTCTGGTTGATTTGCGCTTGGTTCAAAGC  175

Query  205  GATCGCGAACAATGCGCCGGCCGCATATCTCTGCGTCGACGTCAAATTAGACGTAGCTTC  264
            |||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct  174  GATCGCAAACAATGCGCCGGCCGCATATCTCTGAGTCGGCGTCAAATTCGACGTAGCTTC  115

Query  265  CACCATCGAACCCGAAACGAACGTTTGATTTACCGATCAGCCAAAAGAAAAC-ATGGAGG  323
            |||||||||| ||||||| |||||||||||||||||||||| |||| ||| | ||||| |
Sbjct  114  CACCATCGAAACCGAAACAAACGTTTGATTTACCGATCAGCGAAAA-AAAGCCATGGAAG  56

Query  324  AGAAAAATTCGTTG-AAAGTCAGATCACCGTCAAATTTCGAAATCCCGAGAAA  375
            ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  55   AGAAAAAATCGTTGGAAA-TCAGATCACCGTCAAATTTCGAAATCCCGAGAAA  4



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5