BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328146
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36070.2 | Symbols: CPK18 | calcium-dependent protein kinase... 2475 0.0
AT2G17890.1 | Symbols: CPK16 | calcium-dependent protein kinase... 1397 0.0
> AT4G36070.2 | Symbols: CPK18 | calcium-dependent protein kinase
18 | chr4:17056723-17059627 REVERSE LENGTH=1738
Length=1738
Score = 2475 bits (1340), Expect = 0.0
Identities = 1502/1582 (95%), Gaps = 4/1582 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTCTGTTTCTCTTCTCCTAAAGCCACCAGACGTGGCACCAGTCGCCGGAACCCT 60
||||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||
Sbjct 33 ATGGGTCTCTGTTTCTCGTCTCCTAAAGCCACCAGACGTGGCACCGGTAGTCGGAACCCT 92
Query 61 AATCTTCATTCTCCGACGCAGGGGAAGGCTAGTAATAAAAACAAG-AA-GAAGACAAAGA 118
|||| | |||||||||||||||||||||| ||| | || || || || || ||||
Sbjct 93 AATCCTGATTCTCCGACGCAGGGGAAGGCGAGTGA-GAAGGTTAGTAATAAAAAC-AAGA 150
Query 119 AGAGCAAGAACAAGATCCAATGGAGGCACGGGGGAGGGATACCGTACGGTAAGCGCATCG 178
||| | ||| |||||||||| ||||||| |||||||| ||||||||||| |||||||
Sbjct 151 AGAATACGAAGAAGATCCAATTGAGGCACCAAGGAGGGATCCCGTACGGTAAACGCATCG 210
Query 179 ATTTTGGTTACGCTAAGGATTTCGATAATCGATACATCATCGGGAGATTGCTCGGACACG 238
||||||| |||||||||||||||||||| ||||||| ||| |||| |||||||||||| |
Sbjct 211 ATTTTGGGTACGCTAAGGATTTCGATAACCGATACACCATTGGGAAATTGCTCGGACATG 270
Query 239 GCCAGTTTGGCTTTACCTATGTCGCCACCGATAACAACAACGGCAATCGCGTCGCAGTCA 298
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 271 GCCAGTTTGGCTTTACCTACGTCGCCACCGATAACAACAATGGCAATCGCGTTGCAGTCA 330
Query 299 AGAGAATCGAGAAGGCCAAGATGACTCAACCGATTGAAGTGGAAGATGTGAAGCGAGAGG 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AGAGAATCGACAAGGCCAAGATGACTCAACCGATTGAAGTGGAAGATGTGAAGCGAGAGG 390
Query 359 TGAAGATACTACAAGCTTTAGGTGGGCATGAGAATGTGGTTGGCTTTCACAATGCATTTG 418
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 391 TTAAGATACTACAAGCTTTAGGTGGGCATGAGAATGTGGTAGGCTTTCACAATGCATTTG 450
Query 419 AGGACAACAACTATATTTACATAGTCATGGAGTTATGTGAAGGTGGTGAATTGCTAGATC 478
||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 451 AGGACAAGACCTATATTTACATTGTCATGGAGTTATGTGACGGTGGTGAATTGCTAGATC 510
Query 479 GAATACTAGCTAAGAAAGATAGCCGTTACACCGAGAAAGATGCAGCGGTTGTGGTGAGAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GAATACTAGCTAAGAAAGATAGCCGTTACACCGAGAAAGATGCAGCGGTTGTGGTGAGAC 570
Query 539 AAATGCTGAAAGTTGCAGCTGAGTGTCATTTACGAGGTCTAGTGCACCGCGACATGAAGC 598
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 571 AAATGCTGAAAGTTGCAGCTGAATGTCATTTACGAGGTCTAGTTCACCGCGACATGAAGC 630
Query 599 CAGAGAATTTTCTGTTCAAATCAACCGAAGAAGGTTCGTCTCTAAAGGCTACAGATTTTG 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 631 CAGAGAATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTG 690
Query 659 GTTTGTCAGACTTCATAAAGCCAGGAATGAAATTTCAGGATATAGTAGGAAGCGCATACT 718
|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 691 GTCTGTCGGACTTCATAAAGCCAGGAGTGAAATTTCAGGATATAGTAGGAAGCGCATACT 750
Query 719 ACGTCGCACCTGAAGTGTTGAAACGTAGGTCAGGACCTGAATCAGACGTTTGGAGTATTG 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 ACGTTGCACCTGAAGTGTTGAAACGTAGGTCAGGACCTGAATCAGACGTTTGGAGTATTG 810
Query 779 GTGTCATCACTTACATTCTTCTCTGCGGGAGAAGACCCTTCTGGGATAAGACTCAAGACG 838
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GTGTCATCACTTACATTCTGCTCTGCGGGAGAAGACCCTTCTGGGATAAGACTCAAGACG 870
Query 839 GAATATTCAATGAGGTCATGAGaaaaaaaCCTGATTTCAGAGAAGTCCCATGGCCAACCA 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 871 GAATATTCAATGAGGTCATGAGGAAAAAACCTGATTTCAGAGAAGTCCCATGGCCAACCA 930
Query 899 TCAGCAACGGTGCCAAAGATTTCGTGAAGAAGTTGTTAGTTAAGGAGCCGCGGGCACGGT 958
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 931 TTAGCAACGGTGCCAAAGATTTCGTGAAGAAGTTGTTAGTTAAGGAGCCTCGGGCACGGT 990
Query 959 TAACAGCAGCTCAAGCGCTATCACATCCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGG 1018
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 991 TAACAGCAGCTCAAGCGCTATCACATTCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGG 1050
Query 1019 TTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTTAGCCGCCTTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1051 TTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGA 1110
Query 1079 AGCAGATTGCTCTGAGGGCTCTGGCGACAACAATTGATGAGGATGAGCTGGATGATCTCA 1138
|||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1111 AGCAGATTGCACTTAGGGCTCTGGCGAAAACAATTAATGAGGATGAGCTGGATGATCTCA 1170
Query 1139 GAGACCAGTTTGATGCGATTGACATTGACAAGAACGGTTCGATAAGCCTTGAAGAGATGA 1198
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1171 GAGACCAGTTTGATGCGATTGACATTGACAAGAACGGTTCTATAAGCCTTGAGGAAATGA 1230
Query 1199 GGCAGGCTCTTGCGAAAGATGTTCCTTGGAAACTGAAGGATGCAAGAGTTGCAGAGATTC 1258
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1231 GGCAGGCTCTTGCGAAAGATGTTCCTTGGAAACTCAAAGATGCAAGAGTTGCAGAGATTC 1290
Query 1259 TTCAAGCGATTGATAGCAACACTGATGGATTGGTGGATTTCACTGAGTTTGTGGTGGCTG 1318
| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1291 TCCAAGCGAATGATAGCAACACTGATGGTTTGGTGGATTTCACTGAGTTTGTGGTGGCTG 1350
Query 1319 CTTTGCACGTGAACCAATTGGAGGAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CTTTGCACGTGAACCAATTGGAGGAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAG 1410
Query 1379 CAGCATTTGACAAGTTTGACATAGACGGAGATGGGTTTATAACTCCCGAGGAACTTAGAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1411 CAGCATTTGACAAGTTTGACATAGACGGAGATGGGTTTATAACTCCCGAAGAACTTAGAT 1470
Query 1439 TGCAAACGGGTTTGAAAGGCTCCATCGAACCCCTTCTTGAAGAAGCCGACATTGATAAAG 1498
||||||||||||| ||||||||||||||||| ||||||||||| |||||| | ||| |||
Sbjct 1471 TGCAAACGGGTTTAAAAGGCTCCATCGAACCACTTCTTGAAGAGGCCGACGTAGATGAAG 1530
Query 1499 ATGGGAGAATCAGCATCAATGAGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 ATGGGAGAATCAGCATCAATGAGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAA 1590
Query 1559 GAAATGTTAAAAGCCCTCCTGG 1580
|||||||||||||||||||||
Sbjct 1591 AAAATGTTAAAAGCCCTCCTGG 1612
> AT2G17890.1 | Symbols: CPK16 | calcium-dependent protein kinase
16 | chr2:7769885-7772627 REVERSE LENGTH=1716
Length=1716
Score = 1397 bits (756), Expect = 0.0
Identities = 1220/1444 (84%), Gaps = 32/1444 (2%)
Strand=Plus/Plus
Query 156 GATACCGTACGGTAAGCGCATCGATTTTGGTTACGCTAAGGATTTCGATAATCGATACAT 215
||| || ||||||||||| | |||||||| |||||||| ||||| ||| | || ||||
Sbjct 267 GATCCCCTACGGTAAGCGTGTAGATTTTGGGTACGCTAAAGATTTTGATCACCGTTACAC 326
Query 216 CATCGGGAGATTGCTCGGACACGGCCAGTTTGGCTT-TACCTATGTCGCCACCGATAACA 274
||| || | |||||| ||||| || || ||||| || ||| |||||||| |||||||| |
Sbjct 327 CATTGGAAAATTGCTTGGACATGGTCAATTTGG-TTATACATATGTCGCTACCGATAA-A 384
Query 275 ACAA-CGGCAATCGCGTCGCAGTCAAG-AGAATCGAGAAGGCCAAGATGACTCAA--CCG 330
| || ||| |||| ||||| |||||| || ||||| ||||||||||||| ||| |||
Sbjct 385 AAAACCGGTGATCGTGTCGCCGTCAAGAAG-ATCGATAAGGCCAAGATGA--CAATTCCG 441
Query 331 ATTGAAGTGGAAGATGTGAAGCGAGAGGTGAAGATACTACAAGCTTTAGGTGGGCATGAG 390
|| | ||||||||||| ||| |||||||||||||| ||||||||||| ||| |||||
Sbjct 442 ATAGCTGTGGAAGATGTAAAGAGAGAGGTGAAGATATTACAAGCTTTAACTGGTCATGAA 501
Query 391 AATGTGGTT-GGCTTTCACAATGCATTTGAGGACAACAACTATATTTACATAGTCATGGA 449
||||||||| || ||| | ||||| || |||||||| |||| | |||| ||||| |||||
Sbjct 502 AATGTGGTTCGG-TTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATGGA 560
Query 450 GTTATGTGAAGGTGGTGAATTGCTAGATCGAATACTAGCTAAGAAAGATAGCCGTTACAC 509
|||||| || ||||||||||| || ||||| || |||| | ||| ||||||||||| |
Sbjct 561 GTTATGCGAGGGTGGTGAATTACTTGATCGTATTTTAGCCAGGAAGGATAGCCGTTATAG 620
Query 510 CGAGAAAGATGCAGCGGTTGTGGTGAGACAAATGCTGAAAGTTGCAGCTGAGTGTCATTT 569
||||| ||| || || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 621 CGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTT 680
Query 570 ACGAGGTCTAGTGCACCGCGACATGAAGCCAGAGAATTTTCTGTTCAAATCAACCGAAGA 629
||| ||| | || ||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 681 ACGCGGTTTGGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAAGA 740
Query 630 AGGTTCGTCTCTAAAGGCTACAGATTTTGGTTTGTCAGACTTCATAAAGCCAGG-AATGA 688
|| |||| ||||||| ||||| ||||| ||||| || ||||||||||||||||| || |
Sbjct 741 AGATTCGCCTCTAAAAGCTACTGATTTCGGTTTATCTGACTTCATAAAGCCAGGCAA--A 798
Query 689 AA-TTTCAGGATATAGTAGGAAGCGCATACTACGTCGCACCTGAAGTGTTGAAACGTAGG 747
|| ||||| ||||| || || || |||||||| || |||||||||||||| |||||||||
Sbjct 799 AAGTTTCATGATATTGTTGGGAGTGCATACTATGTAGCACCTGAAGTGTTAAAACGTAGG 858
Query 748 TCAGGACCTGAATCAGACGTTTGGAGTATTGGTGTCATCACTTACATTCTTCTCTGCGGG 807
|| |||||||||||||| || |||||||||||||| |||| |||||||||||||||||||
Sbjct 859 TCGGGACCTGAATCAGATGTGTGGAGTATTGGTGTAATCAGTTACATTCTTCTCTGCGGG 918
Query 808 AGAAGACCCTTCTGGGATAAGACTCAAGACGGAATATTCAATGAGGTCATGA-Gaaaaaa 866
||| |||| ||||||||||||||| ||||||| || ||||| ||||| ||| ||| |||
Sbjct 919 AGACGACCATTCTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTTTTGAAGAACAAA 978
Query 867 aCCTGATTTCAGA-GAAGTCCCATGGCCAACCATCAGCAACGGTGCCAAAGATTTCGTGA 925
|||||||||||| ||| || ||||||||||| |||||| | ||||||||||| || |
Sbjct 979 -CCTGATTTCAGAAGAAAACCG-TGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTCA 1036
Query 926 AGAAGTTGTTAGTTAAGGAGCCGCGGGCACGGTTAACAGCAGCTCAAGCGCTATCACATC 985
||||||||||||| || || ||| | || || |||||||| || ||||| ||||||||||
Sbjct 1037 AGAAGTTGTTAGTAAAAGACCCGAGAGCGCGATTAACAGCTGCACAAGCACTATCACATC 1096
Query 986 CATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACA 1045
||||||| | ||||||||| || || || ||| |||| ||||||||||||||||| ||||
Sbjct 1097 CATGGGTTAGAGAAGGAGGAGATGCATCTGAGATTCCCATAGACATATCTGTTCTGAACA 1156
Query 1046 ATATGCGTCAGTTTGTGAAATTTAGCCGCCTTAAGCAGATT-GCTCTGAGGGCTCTGGCG 1104
| ||||||||||||||||||||||||||||||||||| ||| ||| | |||||||| ||
Sbjct 1157 ACATGCGTCAGTTTGTGAAATTTAGCCGCCTTAAGCA-ATTCGCTTTAAGGGCTCTTGCA 1215
Query 1105 ACAACAATTGATGAGGATGAGCTGGATGATCT-CAGAGACCAGTTTGATGCGATTGACAT 1163
|| ||| |||||||||| ||| ||| |||||| | |||||||||||||||||||||| |
Sbjct 1216 ACGACACTTGATGAGGAAGAGTTGGCTGATCTTC-GAGACCAGTTTGATGCGATTGATGT 1274
Query 1164 TGACAAGAACGGT-TCGATAAGCCTTGAAGAGATGAGGCAGGCTCTTGCGAAAGATGTTC 1222
||||||||| ||| || || |||||||||||||||||||||||||| ||||||||| ||
Sbjct 1275 TGACAAGAATGGTGTC-ATTAGCCTTGAAGAGATGAGGCAGGCTCTAGCGAAAGATCATC 1333
Query 1223 CTTGGAAACTGAAGGATGCAAGAGTTGCAGAGATTCTTCAAGCGATTGATAGCAACACTG 1282
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1334 CTTGGAAGCTTAAGGATGCAAGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAG 1393
Query 1283 ATGGATTGGTGGA-TTTCACTGAGTTTGTGGTGGCTGCTTTGCACGTGAACCAATTGGAG 1341
||||||| ||||| ||| | |||||||| | ||||| | ||||| |||||||| |||
Sbjct 1394 ATGGATTCGTGGACTTTGGC-GAGTTTGTCGCCGCTGCGCTACACGTAAACCAATTAGAG 1452
Query 1342 GAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAGCAGCATTTGACAAGTTTGACATA 1401
|| || || || ||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 1453 GAACACGATTCCGAGAAGTGGCAACAGAGATCAAGAGCAGCATTTGAAAAATTCGACATA 1512
Query 1402 GACGGAGATGGGTTTATAACTCCCGAGGAACTTAGATTGCAAACGGGTTTGAAAGGCTCC 1461
|| |||||||| |||||||| | ||||||||| || |||| || || |||||||| |||
Sbjct 1513 GATGGAGATGGATTTATAACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCC 1572
Query 1462 ATCGAACCCCTTCTTGAAGAAGCCGACATTGATAAAGATGGGAGAATCAG-CATC-AATG 1519
|| || || |||||||||||||| |||||||| || ||||| | |||||| | || || |
Sbjct 1573 ATTGAGCCACTTCTTGAAGAAGCAGACATTGACAATGATGGTAAAATCAGTC-TCCAA-G 1630
Query 1520 AGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAAGAAATGTTAAAAGCCCTCCTG 1579
||||||| ||||||||||||| |||||| |||| ||||||||||||| |||||||||||
Sbjct 1631 AGTTTCGTAGACTTTTGAGAACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCTG 1690
Query 1580 GTTA 1583
||||
Sbjct 1691 GTTA 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5