BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328154

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36000.1 | Symbols:  | Pathogenesis-related thaumatin superf...   510    5e-144


> AT4G36000.1 | Symbols:  | Pathogenesis-related thaumatin superfamily 
protein | chr4:17037583-17038713 REVERSE LENGTH=1043
Length=1043

 Score =  510 bits (276),  Expect = 5e-144
 Identities = 325/349 (93%), Gaps = 2/349 (1%)
 Strand=Plus/Plus

Query  219  AGACTTTTATGATGTCAGCCTCGTTGATGGCTATAACCTCCCCATGATCGTGGAGGGTTC  278
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  491  AGACTTTTATGATGTCAGCCTTGTTGATGGCTATAACCTCCCCATGATCGTGGAGGGTTC  550

Query  279  TGGTTTGTGCCCCACCACAGGGTGTGTCACGGACTTAAACCAGAATTGCCCAACAAAGCT  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  551  TGGTTTGTGCCCCACCACAGGGTGTGTCACGGACTTAAACCAGAATTGCCCAACGGAGCT  610

Query  339  AAAAGCCAAGAGCG-GTTTGGCATGTAGAAGTGCGTGTGAGGCGTTTGGAACCCCAGAGT  397
             ||||||||||| | ||||||| ||||||||||||||||||||||||||||  || || |
Sbjct  611  CAAAGCCAAGAG-GAGTTTGGCTTGTAGAAGTGCGTGTGAGGCGTTTGGAAGACCGGAAT  669

Query  398  ATTGCTGCAGTGGCGCATACGGTTCACCTGGTACCTGCAAGCCGTCGATATATTCTCAAG  457
            |||||||||||||||||||||||||||| | || ||||||||||||||| || || ||||
Sbjct  670  ATTGCTGCAGTGGCGCATACGGTTCACCAGATAGCTGCAAGCCGTCGATGTACTCACAAG  729

Query  458  TCTTTAAATCAGCTTGTCCTAAATCGTACAGCTACGCGTACGATGATGCCACAAGTACTT  517
            | ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  730  TTTTTAAGTCAGCTTGTCCTAAATCGTACAGTTACGCGTATGATGATGCCACAAGTACTT  789

Query  518  TCACTTGTAGTGATGCTGATTACACCATCACTTTCTGTCCCAACTTGTC  566
            |||||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct  790  TCACTTGTAGTGGTGCTGATTACACCATCACTTTTTGTCCCAAATTGTC  838


 Score =  230 bits (124),  Expect = 1e-59
 Identities = 140/148 (95%), Gaps = 0/148 (0%)
 Strand=Plus/Plus

Query  73   GGTGTCAAGTGTACAACGTTCACGCTCGTTAACAAATGCGATTTCCCGGTGTGGCCAGGG  132
            ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  174  GGTGTTAAGTGTACAACGTTCACGCTAGTTAACAAATGCGATTTCCCAGTGTGGCCAGGG  233

Query  133  ATTTTATCCGGTTCAGGTAGTCCCAAACTTGATACCACCGGATTCGAGCTCTCCAAAGAT  192
            ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct  234  ATTTTATCCGGTTCAGGTAGTCCCAAACTCGATTCCACTGGATTCGAGCTCTCCAAAGAT  293

Query  193  ACCTCTCGCACTTTTCGAGCACCCGCAG  220
            |||||||||||||| |||||||| ||||
Sbjct  294  ACCTCTCGCACTTTCCGAGCACCTGCAG  321


 Score =  117 bits (63),  Expect = 1e-25
 Identities = 71/75 (95%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  1   ATGGCTCTGTCCCGTCTCCATCTCCCACCTTACGCCTCTGTTCTTGGATTTATCCTCTTG  60
           |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1   ATGGCTCTGTTCAGTCTCCATCTCCCACGTTACGCCTCTGTTCTTGGATTTATCCTCTTG  60

Query  61  TTGCTCCGTGATGGT  75
            ||||||||||||||
Sbjct  61  CTGCTCCGTGATGGT  75



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5