BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328155
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35987.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1384 0.0
> AT4G35987.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:17035028-17036963
FORWARD LENGTH=1148
Length=1148
Score = 1384 bits (749), Expect = 0.0
Identities = 856/908 (94%), Gaps = 6/908 (1%)
Strand=Plus/Plus
Query 23 cttcttcttcttcCTCTGCTCTTAGATGGAAAATTCTTCGTCAAGCGCTTCTCCGTAGAT 82
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 104 CTTCTTCTTCTTCCTCTGCTCTTAGATGGAAAATTCTTCGCCAAGCGCTTCTCCGTAGAT 163
Query 83 CTGATTCTCAATCTCAAGCTGAGACCAATCGGATTTCAAGGAAAGCAACTCAAGGATTCA 142
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 164 CTGATTCTCAATCTCAAACTGAGACCAAACGGATTTCAAGGAAAGCAACTCAAGGATTCA 223
Query 143 ACTTGATTCCTTGTCATGTGGTGGATTCTTCTCCGCAATCGGATAAGTCTCGTGAAGCAT 202
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 224 ACTTGATTCCTTGTCAAGTGGTGGACTCTTCTCCTCAATCGGATAAGTCTCGTGAAGCAT 283
Query 203 GCC-TTTGCTACACAATTCCCATCACTGGCTCTCCGAAACTCTATCTAACACAAAGAGTG 261
|| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 284 -CCGTTTGCTACACACTTCCCATCACTGGCTCTCCCAAACTCTATCTAACACAAAGAGTG 342
Query 262 GATAATTGCAGTGATCTCAATGACTTTGAGATATCTAATCGATACAACATTGATAACACT 321
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 343 GATAATTGTAGTGATCTCAATGACTTCGAGATATCTAATCGATACAACATTGATAATACT 402
Query 322 GGACTTGTCTGTCAATGGCCCTCAGAAGAAGTTCTAGCATACTTTTGCATGTCTCAGCCA 381
|||||||||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||
Sbjct 403 GGACTTGTCTGTCAGTGGCCCTCTGAAGAAGTACTAGCCTACTTTTGCAAGTCTCAGCCA 462
Query 382 GATCGATTCAGAGGCAAAAGAGTAATTGAGCTTGGATCGGGGTATGGATTAGCCGGTTTA 441
|| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 463 GAACGTTTCAGAGGTAAAAGAGTAATTGAGCTTGGATCAGGGTATGGATTAGCCGGTTTA 522
Query 442 GTTATTGCAGCTGTC-ACCGAGGCATCACAAGTGGTAATCTCAGATGGAAATCCCCAAGT 500
||||||||||||| | |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 523 GTTATTGCAGCTG-CAACCGAGGCATCAGAAGTGGTAATCTCCGATGGAAACCCCCAAGT 581
Query 501 AGTCAATTATATTAAGCGTAACATAGAATCCAACTCCATGGCATTTGGTGGCACAAGCGT 560
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 582 AGTCAATTATATTAAACGTAACATAGAAACCAACTCCATGGCATTTGGTGGCACAAGCGT 641
Query 561 AAAAGCCATGGAGTTGCACTGGAATCAGCATGAACTTTCAGAGTTAACCAACACTTTCGA 620
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 642 AAAAGCCATGGAGTTGCACTGGAATCAGCATCAACTTTCAGAGTTAACCAACACTTTCGA 701
Query 621 CATCATAGTTGCAAGCGATTGTACATTTTTCAAGGAATTTCATAAGCATCTCGCAAGAAC 680
|||||||||||||||||||||||||||||||||||||||||||||| | || || |||||
Sbjct 702 CATCATAGTTGCAAGCGATTGTACATTTTTCAAGGAATTTCATAAGGACCTTGCGAGAAC 761
Query 681 CATCAAGATGCTGCTTAAAGCCAAAGAACCCTCGGAAGCACTATTTTTCAGTCCTAAAAG 740
||||||||||||||||||||||||| || |||| |||||| |||||||||||||||| ||
Sbjct 762 CATCAAGATGCTGCTTAAAGCCAAAAAAGCCTCCGAAGCATTATTTTTCAGTCCTAAGAG 821
Query 741 AGGTGACTCCTTAGATAAGTTCTTGAAGGAGATTGAAG-ACATTGGTTTACACTACAACT 799
|||||||||||| || |||||| ||||||||||| ||| |||||||||||||||||| |
Sbjct 822 AGGTGACTCCTTGGAAAAGTTCATGAAGGAGATT-AAGGACATTGGTTTACACTACATTT 880
Query 800 TAACCGAAAACTACGATGCACAAGTTTGGAAGCGCCATGAGACACTTGTGAAAGGAGACG 859
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 881 TAACTGAAAACTACGATGCACAAGTTTGGAAGCGCCATGAGACGCTTGTGAAAGGAGACG 940
Query 860 ACGCTTGGCCTAACTATGACAAGAATCATTGCTACCCTTTACTTATTCAAGTTACGAATC 919
| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 941 AAGCTTGGCCTAACTATGACAAGAATCATTGCTACCCTTTACTTATTCAAATTACTAATC 1000
Query 920 ATATTTAG 927
| ||||||
Sbjct 1001 AGATTTAG 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5