BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328182
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35700.1 | Symbols: | zinc finger (C2H2 type) family protei... 699 0.0
> AT4G35700.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr4:16923319-16924320 FORWARD LENGTH=1002
Length=1002
Score = 699 bits (378), Expect = 0.0
Identities = 700/851 (82%), Gaps = 40/851 (5%)
Strand=Plus/Plus
Query 1 ATGAGTAATCCCGAGAAGTCCAAAATTAATGAGGAAGACATTATTGAAAATTCTGACGAG 60
|||||||||||||||||||| |||||| ||||||||| | | ||| |||| |||||||
Sbjct 33 ATGAGTAATCCCGAGAAGTCTAAAATTGCTGAGGAAGAGA--A-TGAGAATTTTGACGAG 89
Query 61 AGTGATTATCTTTGGAGCGATGAAGAAGGAGAAATCCGTGAAATTGTTCTTGCCCTTCCT 120
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 90 AGTGATTATCTTTGGAGCGATGAAGAAGGAGACATACGTGAAATTGTTCTTGGCCTTCCT 149
Query 121 GCACTGAGACTCAGTGAGAGTCTCCATGTGGACGAAACCATCCGTAACGAAGCCGCTGCC 180
||||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||| | ||
Sbjct 150 GCACTAAGACTTAGTGAGAGTCTCAATGTGGATGAAAGCATCCGTAACGAAGCCGTTTCC 209
Query 181 GCGGCGAATTTGATTGTGGCAGCCGTCGAA-GAAGCGGCGGGGAAGACAGATCAAATTGC 239
|||||||| ||||| |||||||||| | || ||||| | ||||| ||||| |||| |||
Sbjct 210 GCGGCGAAGTTGATCGTGGCAGCCG-CCAAGGAAGCCACAGGGAATACAGAACAAAGTGC 268
Query 240 AAGTGGTATTGGTAACGCTAGTGGGACTCCCA-ATAGT-aaaaaaaTTGGTAGGCCACGT 297
||||||| ||| ||| |||||| ||| ||| | | | | |||| |||| | || |||
Sbjct 269 TAGTGGTACCGGTGACGTTAGTGGAACT-CCAGA-AATCATAAAAGTTGGGAAACCCCGT 326
Query 298 GTCTTATTGGAA--GCTGAAGCCGCAGCGTCTGGTTCTACCGCC-ATTGGGACGACAAGT 354
|| ||||||||| |||| |||| ||| ||||||| |||| || |||||| ||| | |
Sbjct 327 GTATTATTGGAAGCGCTG--GCCGAAGCATCTGGTTGTACC-CCTATTGGGGTGACCACT 383
Query 355 ACTGAAAGAGAGGTAGTGAAGAAACCCCGTAGGAAAGGTTCTACCCAGTTGACTCATCTA 414
|||||| |||||||||| ||||||||||||| |||||||||||| |||||||| |||||
Sbjct 384 ACTGAAGGAGAGGTAGTCAAGAAACCCCGTAAGAAAGGTTCTACTCAGTTGACACATCTG 443
Query 415 CCTCAAGGCCCTCCTATGTGTAATGTTTGTGGGAAGGGCTTTGCTTCTTGGAAGGCCGTT 474
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 444 CCGCAAGGCCCTCCTATGTGTAATGTTTGTGGGAAGGGCTTTGCTTCTTGGAAGGCTGTT 503
Query 475 TTTGGACATTTAAGGCAGCATAAAGATCGTGGTTATCTAGGTTTTCTTCCTCCGCCAACA 534
||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 504 TTTGGACATCTAAGGCAGCATAAGGATCGAGGGTATCTAGGTTTTCTTCCTCCGCCAACA 563
Query 535 TTCAATGCGGCTGAGGAAGGATTTGGTGGAGTCGCTACTGTTTCTTCCGCTGTTGGAGTC 594
|||||||| ||||||||||||||||||||||| ||||||| ||| ||| || || |||
Sbjct 564 TTCAATGCTGCTGAGGAAGGATTTGGTGGAGTTGCTACTGCTTCAACCGGTGGTGCAGTA 623
Query 595 GCTACTGCT-TCTTCCGCTGTTGGAGTCGCC-ATTGCTTCCTCCGGTGGCGGAGTCGCTA 652
|| |||||| | ||||| || || |||| || | |||||| |||| ||| ||| ||||||
Sbjct 624 GCCACTGCTAT-TTCCGTTGGTGAAGTC-CCTACTGCTTCTTCCGCTGGTGGACTCGCTA 681
Query 653 CAGCTTGTGCCGCTGGTGGAGTCGCTACATCTTCTTCCGCCGGCACCGGAGCTGTGGGGA 712
| |||| | ||| ||||| || ||| | ||| ||| | || || | || |
Sbjct 682 CGGCTTCTTCCGATGGTGAAGG-GCTTG-T-TTCAAGTATCGGAA--GG-GC-GAGG--A 732
Query 713 TCGATCTGAACAAA--GATCCCA-TCGAGGAGGAAGACAAGGCACCTGGACCT--A---A 764
| || || || | ||||| | |||||||||||||||||| | |||| | | |
Sbjct 733 TTGA-CTTAA-ATGCCGATCC-AGTCGAGGAGGAAGACAAGGTAATTGGAGTTGGATCTA 789
Query 765 A-CGAAAATTTGATCTTAATAGGTCTCCTCCACAAGACGATGAAGAAGAGAAGGACGAGA 823
| |||||||||||||| |||||||| || |||| ||||| ||| |||||||| || || |
Sbjct 790 AGCGAAAATTTGATCTGAATAGGTCCCCCCCACCAGACGGTGATGAAGAGAACGATGATA 849
Query 824 AAGCCGAGTGA 834
||| |||||||
Sbjct 850 AAGTCGAGTGA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5