BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328213
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35335.1 | Symbols: | Nucleotide-sugar transporter family p... 1746 0.0
> AT4G35335.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr4:16807265-16810216 FORWARD LENGTH=1281
Length=1281
Score = 1746 bits (945), Expect = 0.0
Identities = 1022/1060 (96%), Gaps = 2/1060 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTACCGGAAAATCAAAGACGAGGACGATCATGACGTCGCTTCTGATATCGAGAGT 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 22 ATGGAGTACCGGAAAATCAAAGATGAGGACGATCATGACGTTGCTTCTGATATCGAGAGT 81
Query 61 GTGAAAGGAAAATCTCATACCGTTGCTTCGAGTAACATTGCGATGGCTACTCTGGGTGTT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 82 GTGAAAGGAAAATCTCATACCGTTGCTTCGAGTAACATTGCAATGGCTACTCTGGGTGTT 141
Query 121 GGATCCAGTGAACGGATCAACTGGAAACGAAAGGGTGTAGTGACATGTGCACTAACGATT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 142 GGATCCAGTGAACGGATCAACTGGAAACGAAAGGGTGTAGTAACATGTGCACTGACGATT 201
Query 181 CTGACGAGTTCTCAAGCGATACTCATCGTGTGGTCGAAGCGAGCTGGGAAGTATGAGTAT 240
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 202 CTGACGAGTTCTCAAGCGATACTTATCGTGTGGTCGAAACGAGCTGGGAAGTATGAGTAT 261
Query 241 AGTGTTACAACCGCCAACTTTTTGGTT-GAGACTCTGAAATGTGCTTTATCTCTTCTTGC 299
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 262 AGTGTTACAACCGCCAACTTTTTGGTTGGA-ACTCTGAAATGTGCGTTATCTCTTCTTGC 320
Query 300 ATTGACAAGGATTTGGAAAAACGAAGGTGTTACTGACGACAACAGGTTAAGCACAACATA 359
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 321 TTTGACAAGGATATGGAAAAATGAAGGTGTTACTGACGACAACAGGTTAAGCACAACATT 380
Query 360 TGATGAAGTTAAAGTCTTTCCTATTCCTGCAGCGTTGTATCTTTTCAAGAATTTGTTACA 419
||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct 381 TGATGAAGTTAAAGTCTTTCCAATTCCCGCAGCATTGTATCTTTTTAAGAATTTGTTACA 440
Query 420 GTACTATATTTTTGCTTACGTAGACGCCCCAGGCTATCAGATATTGAAGAACTTGAACAT 479
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GTATTATATTTTTGCATATGTAGACGCCCCAGGCTATCAGATATTGAAGAACTTGAACAT 500
Query 480 CATAAGTACCGGTGTCTTGTACAGAATTATACTGAAGAAAAAATTGAGCGAGATTCAGTG 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 501 CATAAGTACCGGTGTCTTGTACAGAATTATACTGAAGAGAAAATTGAGCGAGATTCAGTG 560
Query 540 GGCGGGTTTCATTCTATTGTGTTGCGGATGCACCACTGCTCAGCTGAATTCAAATTCTGA 599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 561 GGCGGGTTTCATTCTATTGTGTTGCGGATGCACCACTGCTCAGTTGAATTCAAATTCTGA 620
Query 600 TCGTGTTCTTCAGACATCTCTTCCTGGCTGGACTATGGCAATTGTCATGGCTCTTTTAAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TCGTGTTCTTCAGACATCTCTTCCTGGCTGGACTATGGCAATTGTCATGGCTCTTTTAAG 680
Query 660 TGGTTTCGCCGGAGTGTACACAGAGGCCATTATAAAAAAGCGACCTTCAAGGAATATAAA 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 681 TGGTTTCGCCGGAGTGTACACAGAGGCCATTATTAAAAAGCGACCTTCAAGGAATATAAA 740
Query 720 TGTACAGAACTTCTGGCTATATGTCTTTGGGATGGCTTTCAATGCTGTTGCTATAGTGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGTACAGAACTTCTGGCTATATGTCTTTGGGATGGCTTTCAATGCTGTTGCTATAGTGAT 800
Query 780 CCAAGATTTCGATGCCGTTGCAAACAAGGGATTTTTCCATGGTTACTCCTTCATCACAGT 839
||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 801 CCAAGATTTTGATGCCGTTGCAAATAAGGGATTCTTCCATGGTTACTCCTTCATCACATT 860
Query 840 ACTCATGATTCTTAACCATGCACTCAGTGGCATTGCAGTGTCGATGGTGATGAAATATGC 899
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 861 ACTCATGATTCTTAACCATGCTCTCAGTGGCATTGCTGTGTCGATGGTGATGAAATATGC 920
Query 900 AGACAATATTGTAAAGGTTTATTCGACATCAGTAGCAATGCTTCTCACCGCGGTTGTCTC 959
||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 921 AGACAATATCGTGAAGGTTTATTCGACATCAGTGGCGATGCTTCTCACCGCAGTTGTCTC 980
Query 960 TGTATTCCTCTTCAATTTTCATCTTTCCCTAGCCTTCTTCTTGGGTTCAACGGTCGTCTC 1019
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 981 TGTATTCCTCTTCAATTTTCATCTTTCCTTAGCCTTCTTCTTGGGTTCAACGGTCGTCTC 1040
Query 1020 TGTTTCAGTATATTTGCATTCTGCAGGGAAGCTACGATAG 1059
||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1041 TGTTTCAGTATATTTACATTCCGCAGGGAAGCTACGATAG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5