BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328224
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35230.1 | Symbols: BSK1 | BR-signaling kinase 1 | chr4:1675... 2150 0.0
> AT4G35230.1 | Symbols: BSK1 | BR-signaling kinase 1 | chr4:16755112-16758091
REVERSE LENGTH=1802
Length=1802
Score = 2150 bits (1164), Expect = 0.0
Identities = 1249/1290 (97%), Gaps = 6/1290 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTGTTGTCAATCCTTGTGTTCCGGTGAAAACCCACTTGGGAAAGATGGAGCTCAG 60
|||||||||||||||||||||| |||||| || |||||||||||||||||||||| ||||
Sbjct 51 ATGGGTTGTTGTCAATCCTTGTTTTCCGGCGATAACCCACTTGGGAAAGATGGAGTTCAG 110
Query 61 CCGCAACCACTATCTCAAAACCACCACCGCGGCGCTACGGCTGCTGATAACGGTGGAATC 120
||||||||||||||||||||| | ||| |||| |||||| | ||||||||| || |
Sbjct 111 CCGCAACCACTATCTCAAAACAATCACGGCGGAGCTACGACGGCTGATAAC---GG---C 164
Query 121 GGAAGCGGCGGAGCTAGTGGTGTAGGCGGCggaggaggaggaggagggaTCCCATCTTTC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 165 GGAAGCGGCGGAGCTAGTGGTGTAGGCGGCGGAGGAGGAGGAGGAGGAATCCCATCTTTC 224
Query 181 TCTGAGTTCTCTTTTGCTGACCTTAAAGCAGCTACAAACAACTTTAGCTCAGACAACATC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TCTGAGTTCTCTTTCGCTGACCTTAAAGCAGCTACAAACAACTTTAGCTCAGACAACATC 284
Query 241 GTATCAGAAAGTGGTGAGAAAGCCCCAAATCTTGTCTACAAAGGCCGACTTCAGAACCGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GTATCAGAAAGTGGTGAGAAAGCCCCAAATCTTGTCTACAAAGGCCGACTTCAGAACCGT 344
Query 301 CGTTGGATCGCTGTCAAGAAGTTTACTAAGCTGGCTTGGCCTGAGCCTAAACAATTTGCG 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 345 CGTTGGATCGCTGTCAAGAAGTTTACTAAGATGGCTTGGCCTGAGCCTAAACAATTTGCG 404
Query 361 GAAGAAGCATGGGGTGTGGGGAAATTGAGGCATAATCGATTAGCGAATTTGATTGGGTAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 405 GAAGAAGCATGGGGTGTGGGGAAATTGAGGCATAATCGATTAGCGAATTTGATTGGATAT 464
Query 421 TGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAATTCATGCCTAATGATACTCTTGCT 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 465 TGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCT 524
Query 481 AAGCATTTGTTCCATTGGGAAAATCAGACAATTGAATGGGCTATGAGGTTGCGAGTAGGA 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 525 AAGCATTTGTTCCATTGGGAAAATCAGACAATTGAGTGGGCTATGAGGTTGCGAGTAGGA 584
Query 541 TATTACATAGCCGAAGCATTGGATTATTGTAGTACCGAGGGTCGTCCATTGTACCATGAT 600
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 585 TATTACATAGCTGAGGCTTTGGATTATTGTAGTACTGAGGGTCGTCCATTGTACCATGAT 644
Query 601 TTGAATGCTTATAGGGTTCTCTTTGATGAGGATGGTGATCCTCGTCTCTCATGTTTTGGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTGAATGCTTATAGGGTTCTCTTTGATGAGGATGGTGATCCTCGTCTCTCATGTTTTGGC 704
Query 661 TTGATGAAGAACAGTAGAGATGGTAAAAGTTATAGCACAAATCTAGCATATACACCACCT 720
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 705 TTGATGAAGAACAGTAGGGATGGTAAAAGTTATAGCACAAATTTAGCTTATACACCACCT 764
Query 721 GAATATCTAAGAAATGGAAGAGTGACACCTGAAAGTGTTACGTATAGCTTTGGAACTGTC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GAATATCTAAGAAATGGAAGAGTGACACCTGAAAGTGTTACGTATAGCTTTGGAACTGTC 824
Query 781 CTTCTGGATTTGCTTAGCGGAAAGCACATCCCTCCAAGCCATGCTCTCGATATGATACGA 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 825 CTTCTGGATTTGCTTAGCGGAAAACACATCCCTCCAAGCCATGCTCTCGATATGATACGA 884
Query 841 GGCAAGAATATTATTCTCTTGATGGATTCACACCTCGAAGGAAAGTTCTCAACAGAAGAG 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GGCAAGAATATTATTCTGTTGATGGATTCACACCTCGAAGGAAAGTTCTCAACAGAAGAG 944
Query 901 GCTACTGTAGTTGTCGAACTCGCCTCTCAATGTTTGCAATATGAGCCTCGAGAGAGACCC 960
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 945 GCTACTGTAGTGGTCGAACTCGCCTCTCAATGTTTACAATATGAGCCTCGAGAGAGACCA 1004
Query 961 AATACCAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACGTTCCATCT 1020
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 AATACAAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACGTTCCATCT 1064
Query 1021 TATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCGACTCCACAGAGACCACTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCGACTCCACAGAGACCACTT 1124
Query 1081 TCGCCATTAGGTGAGGCCTGTTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTC 1140
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCGCCATTAGGTGAGGCCTGCTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTC 1184
Query 1141 ATGACACATTACAGAGACGACGAAGGCACAAACGAGTTATCATTCCAAGAATGGACGCAA 1200
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1185 ATGACACATTACAGAGACGACGAGGGCACAAACGAGTTATCATTCCAAGAATGGACTCAA 1244
Query 1201 CAGATGAAAGATATGCTTGATGCACGGAAACGCGGTGATCAATCTTTCCGCGAAAAAGAT 1260
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1245 CAAATGAAAGATATGCTTGATGCACGGAAACGCGGTGATCAATCTTTCCGCGAGAAAGAT 1304
Query 1261 TTTAAAACAGCCATCGACTGTTACTCACAG 1290
|| |||||||||||||||||||||||||||
Sbjct 1305 TTCAAAACAGCCATCGACTGTTACTCACAG 1334
Score = 412 bits (223), Expect = 4e-114
Identities = 241/250 (96%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 1323 ACAGTTCATTGACGTTGGAACAATGGTGTCTCCAACTGTATTTGGTCGGCGAAGTCTATG 1382
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1331 ACAGTTCATTGACGTTGGAACAATGGTATCTCCAACTGTATTTGGTCGGCGAAGTCTATG 1390
Query 1383 CTACTTACTATGCGATCAACCAGACGCAGCACTACGCGACGCGATGCAAGCACAATGCGT 1442
|||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 1391 CTACTTACTATGCGATCAACCAGATGCAGCACTACGCGACGCAATGCAAGCGCAGTGTGT 1450
Query 1443 GTATCCGGATTGGCCAACGGCTTTCTACATGCAGTCTGTGGCATTAGCGAAGCTGAACAT 1502
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 GTATCCGGATTGGCCAACAGCTTTCTACATGCAGTCTGTGGCATTAGCGAAGCTGAACAT 1510
Query 1503 GAACACAGACGCAGCCGATATGTTGAACGAAGCAGCTCAGCTTGAAGAGAAGAGACAACG 1562
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1511 GAACACAGACGCAGCCGATATGTTGAACGAAGCAGCTCAGCTCGAAGAAAAGAGACAACG 1570
Query 1563 AGGCGGCAGA 1572
||||||||||
Sbjct 1571 AGGCGGCAGA 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5