BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328231
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35160.1 | Symbols: | O-methyltransferase family protein | ... 1773 0.0
AT4G35150.1 | Symbols: | O-methyltransferase family protein | ... 929 0.0
> AT4G35160.1 | Symbols: | O-methyltransferase family protein
| chr4:16730760-16732811 REVERSE LENGTH=1381
Length=1381
Score = 1773 bits (960), Expect = 0.0
Identities = 1060/1109 (96%), Gaps = 4/1109 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGA-AACTAAAAGAAGAGTACTAGATGAAGAAGCCAAAGCTTCTCTAGACATATG 59
|||||||| || |||||||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 46 ATGGAAGACAA-TAAAAGAAAAGTATTAGATGAAGAAGCGAAAGCTTCTCTAGACATATG 104
Query 60 GAGGTATGTCTTTGGGTTTGCAGATATCGCAGCTGCAAAGTGTGCCATTGATCTTAAAAT 119
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 105 GAAGTATGTCTTTGGGTTTGCAGATATAGCAGCTGCAAAGTGTGCCATTGATCTTAAAAT 164
Query 120 ACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGTAACACTAGCCGAACTCTCCTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGTAACACTAGCCGAACTCTCCTC 224
Query 180 CGCCGTCTCCGCCTCTCCCTCACATCTCCGCCGTATAATGAGGTTTCTTGTACACCAAGG 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 225 CGCCGTCTCCGCCTCTCCCTCGCATCTCCGCCGTATAATGAGGTTTCTTGTACACCAAGG 284
Query 240 AATCTTCAAAGAAATCCCCACAAAAGATGGTTTAGCCACAGGCTACGCTAATACGCCACT 299
|||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 285 AATCTTTAAAGAAATCCCCACAAAAGATGGTTTAGCTACAGGCTACGTTAATACGCCACT 344
Query 300 CTCTCGCCGTATGATGATCACAAAACGTGATGGCAAATCGCTGGCTCCTTTTGTTCTCTT 359
|||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 345 CTCTCGCCGTTTGATGATCACAAGACGTGATGGAAAATCGCTGGCTCCTTTTGTTCTCTT 404
Query 360 CGAAACAACTCCCGAGATGCTCGCTCCATGGTTGAGACTTAGCTCAGTCGTTTCTTCGCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CGAAACAACTCCCGAGATGCTCGCTCCATGGTTGAGACTTAGCTCAGTCGTTTCTTCGCC 464
Query 420 GGTCAACGGTTCAGCTCCACCACCGTTTGATGCAGTGCACGGTAAGGACGTGTGGTCGTT 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GGTCAACGGTTCAACTCCACCACCGTTTGATGCAGTGCACGGTAAGGACGTGTGGTCGTT 524
Query 480 CGCGCAGGATAATCCGTTCCTCAGCGATATGATCAATGAGGCCATGGCTTGTGATGCAAG 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CGCGCAGGATAATCCCTTCCTCAGCGATATGATCAATGAGGCCATGGCTTGTGATGCAAG 584
Query 540 GCGCGTGGTGCCACGTGTAGCCGGAGCTTGTCACGGCTTGTTTGACGGCGTGG-TCACGG 598
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 585 GCGCGTGGTGCCACGTGTAGCCGGAGCTTGTCACGGCTTGTTTGATGGCGTGACT-ACGA 643
Query 599 TGATTGACGTAGGAGGCGGTACCGGAGAGACGATGGGGATACTCGTAAAGGAGTTTCCTT 658
|| ||||||||||||| ||||| ||||||||||||||||| || || |||||||||||||
Sbjct 644 TGGTTGACGTAGGAGGTGGTACGGGAGAGACGATGGGGATGCTTGTGAAGGAGTTTCCTT 703
Query 659 GGATCAAAGGATTTAACTTTGATCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACG 718
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 704 GGATCAAAGGATTTAACTTTGATCTTCCTCATGTCATTGAAGTTGCTGAAGTCTTGGACG 763
Query 719 GTGTCGAGAATGTTGAGGGCGATATGTTTGATTCTATCCCCGCATGCGACGCTGTTATCA 778
|||| |||||||||||||||||||||||||||||||| || || |||||||| || |||
Sbjct 764 GTGTTGAGAATGTTGAGGGCGATATGTTTGATTCTATTCCGGCTTGCGACGCCATTTTCA 823
Query 779 TCAAGTGGGTGTTACACGATTGGGGAGACAAAGACTGCATAAAGATATTGAAGAATTGCA 838
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 824 TCAAGTGGGTGTTACACGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCA 883
Query 839 AAGAAGCGGTCCCACCAAATAACGGGAAAGTGTTGATAGTAGAATCGGTGATCGGAGAGA 898
||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 884 AAGAAGCGGTCCCTCCAAATATCGGAAAAGTGTTGATAGTGGAATCGGTGATCGGAGAGA 943
Query 899 ATAAAAAGACGATGATAGTGGACGAAAGAGATGACAAGTTAGAGCACGTGAGATTGATGC 958
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 944 ATAAAAAGACGATGATAGTGGACGAACGAGATGAAAAGTTAGAGCACGTGAGATTGATGC 1003
Query 959 TTGATATGGTGATGATGGCTCACACAAGCACAGGCAAAGAACGAACTTTGAAAGAATGGG 1018
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1004 TTGATATGGTGATGATGGCTCACACAAGCACAGGCAAAGAACGGACTTTGAAAGAATGGG 1063
Query 1019 ACTTTGTTCTTAAAGAAGCTGGTTTTGCTCGATATGAGGTTCGGGACATTGATGATGTTC 1078
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1064 ACTTTGTTCTTAAAGAAGCTGGCTTTGCTCGATATGAGGTTAGGGACATTGATGATGTTC 1123
Query 1079 AGTCTCTTATCATCGCGTATCGGTCTTAA 1107
|| |||||| ||||||||||||||||||
Sbjct 1124 AGAGTCTTATAATCGCGTATCGGTCTTAA 1152
> AT4G35150.1 | Symbols: | O-methyltransferase family protein
| chr4:16726948-16728531 REVERSE LENGTH=978
Length=978
Score = 929 bits (503), Expect = 0.0
Identities = 606/656 (92%), Gaps = 6/656 (1%)
Strand=Plus/Plus
Query 455 TGCACGGTAAGGACGTGTGGTCGTTCGCGCAGGATAATCCGTTCCTCAGCGATATGATCA 514
|||| ||||||||| ||||| ||||||| |||||||||| || || |||| | ||||||
Sbjct 326 TGCATGGTAAGGACTTGTGGGCGTTCGCACAGGATAATCTGTGCCACAGCCAGCTGATCA 385
Query 515 ATGAGGCCATGGCTTGTGATGCAAGGCGCGTGGTGCCACGTGTAGCCGGAGCTTGTCACG 574
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 386 ACGAGGCCATGGCTTGTGATGCAAGGCGCGTGGTGCCACGTGTAGCTGGAGCTTGTCAAG 445
Query 575 GCTTGTTTGACGGCGTGGTC-ACGGTGATTGACGTAGGAGGCGGTACCGGAGAGACGATG 633
|||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||
Sbjct 446 GCTTGTTTGACGGCGTGG-CTACGGTGGTTGACGTAGGAGGAGGTACCGGAGAGACGATG 504
Query 634 GGGATACTCGTAAAGGAGTTTCCTTGGATCAAAGGATTTAACTTTGATCTTCCTCATGTT 693
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 505 GGAATACTTGTAAAGGAGTTTCCTTGGATCAAAGGATTTAACTTTGACCTTCCTCATGTT 564
Query 694 ATTGAAGTTGCTCAAGTCTTGGACGGTGTCGAGAATGTTGAGGGCGATATGTTTGATTCT 753
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 565 ATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGAGGGCGATATGTTTGATTCT 624
Query 754 ATCCCCGCATGCGACGCTGTTATCATCAAGTGGGTGTTACACGATTGGGGAGACAAAGAC 813
|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 ATTCCGGCAAGCGACGCTGTTATCATCAAGTGGGTGTTACACGATTGGGGAGACAAAGAT 684
Query 814 TGCATAAAGATATTGAAGAATTGCAAAGAAGCGGTCCCACCAAATAACGGGAAAGTGTTG 873
|||||||||||||||||||||||||||||||| || | |||||||| ||| |||||||||
Sbjct 685 TGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTTCTACCAAATATCGGCAAAGTGTTG 744
Query 874 ATAGTAGAATCG-GTGATCGGAGAGAATAAAAAGACGATGATAGTGGACGAAAGAGATGA 932
||||| || | | || ||||||||||| ||||| |||||||||| ||| |||||||||||
Sbjct 745 ATAGTGGAGT-GTGTTATCGGAGAGAAGAAAAACACGATGATAGCGGAAGAAAGAGATGA 803
Query 933 CAAGTTAGAGCACGTGAGATTG-ATGCTTGATATGGTGATGATGGCTCACACAAGCACAG 991
|||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||
Sbjct 804 CAAGTTAGAGCACGTGAGATTGCA-GCTTGACATGGTGATGATGGTTCACACAAGCACAG 862
Query 992 GCAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTAAAGAAGCTGGTTTTGCTCGAT 1051
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 863 GCAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTACAGAAGCTGGCTTTGCTCGAT 922
Query 1052 ATGAGGTTCGGGACATTGATGATGTTCAGTCTCTTATCATCGCGTATCGGTCTTAA 1107
|||||||| | ||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 923 ATGAGGTTAGAGACTTTGATGATGTTCAGTCTCTTATCATCGCATATCGATCTTAA 978
Score = 459 bits (248), Expect = 3e-128
Identities = 306/334 (92%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAACTAAAA-GAAGAGTACTAGATGAAGAAGCCAAAGCTTCTCTAGACATATG 59
|||||||||| ||||| ||| || ||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGGAAGAAAGTAAAAGGAA-TTTATTAGATGAAGAAGCGAAAGCTTCTTTAGACATATG 59
Query 60 GAGGTATGTCTTTGGGTTTGCAGATATCGCAGCTGCAAAGTGTGCCATTGATCTTAAAAT 119
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 60 GAGATATGTTTTTGGGTTTGCAGATATTGCAGCTGCAAAGTGTGCCATTGATCTCAAAAT 119
Query 120 ACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGTAACACTAGCCGAACTCTCCTC 179
||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 120 ACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGTGACACTATCCGAACTCTCCTC 179
Query 180 CGCCGTCTCCGCCTCTCCCTCACATCTCCGCCGTATAATGAGGTTTCTTGTACACCAAGG 239
|||||||| || ||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 180 TGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAATGCGGTTTCTTGTGCACCAAGG 239
Query 240 AATCTTCAAAGAAATCCCCACAAAAGATGGTTTAGCCACAGGCTACGCTAATACGCCACT 299
| ||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 240 ACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCACTGGCTACACTAACACGCCACT 299
Query 300 CTCTCGCCGTATGATGATCACAAAACGTG-ATGG 332
|||||||||||||||||||||||||| || ||||
Sbjct 300 CTCTCGCCGTATGATGATCACAAAAC-TGCATGG 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5