BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328280

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   363    6e-100


> AT4G34600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: pollen tube growth; LOCATED 
IN: endomembrane system; EXPRESSED IN: 11 plant structures; 
EXPRESSED DURING: M germinated pollen stage, LP.04 four 
leaves visible, 4 anthesis, petal differentiation and expansion 
stage; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17 proteins 
in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr4:16529225-16530199 FORWARD LENGTH=548
Length=548

 Score =  363 bits (196),  Expect = 6e-100
 Identities = 237/255 (93%), Gaps = 9/255 (4%)
 Strand=Plus/Plus

Query  1    ATGGGTTTATTGCCATTGGTGAAGAAACTAGG-TT--TCATCTTTCTTCTTA-TTTCAGC  56
            |||||||| ||||||||||||||||||||||| ||  |||||||||||| || |||||||
Sbjct  56   ATGGGTTTGTTGCCATTGGTGAAGAAACTAGGTTTCATCATCTTTCTTC-TAGTTTCAGC  114

Query  57   TTCAGCGTTTGCTCTCTCTTCTGCAGGACGATCATCCATTCTAATCTATAGCCAAGAAGA  116
            ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct  115  TTCAGCGTTTGCTCTCTGTTCTGCAGGCCGATCATCCATTTTAATCTATAGCCAAGAAGA  174

Query  117  TGATCATCCAGAGGTGGTGGAAAGAAGAATACATGAGCATGAGAGAAT-CTTGAGAATGA  175
            ||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||
Sbjct  175  TGATCATCCCGAGGTAGTAGAAAGAAGAATACATGAGCATGAGAGAATTCT-GAGAATGA  233

Query  176  ATTCA-GTAGACTATGGCCACTTCAGTCCTAAACCAAAGCTCGTGAGGCCTCCTTTCAAG  234
            ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct  234  ATTCAAG-AGACTATGGCCACTCCAGTCCTAAACCAAAGCTCGTGAGACCTCCTTTCAAG  292

Query  235  CTTATTCCCAACTGA  249
            |||||||||||||||
Sbjct  293  CTTATTCCCAACTGA  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5