BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328285
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34555.1 | Symbols: | Ribosomal protein S25 family protein ... 344 2e-94
> AT4G34555.1 | Symbols: | Ribosomal protein S25 family protein
| chr4:16504230-16505472 REVERSE LENGTH=611
Length=611
Score = 344 bits (186), Expect = 2e-94
Identities = 202/210 (96%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCTGTTCGACCAAGCAACTTACGACAAGCTTCTCTCTGAGGCTCCCAAGTTCAAA 60
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 ATGGTTTTGTTTGACCAAGCAACTTACGACAAGCTTCTCTCTGAGGCTCCCAAGTTCAAA 310
Query 61 CTTATCACTCCTTCTATCCTCTCTGACCGTTTGAGGATCAATGGATCCCTTGCTAGGAGG 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 311 CTTATCACTCCTTCTATCCTCTCTGACCGTTTGAGGATCAATGGATCGCTTGCTAGAAGG 370
Query 121 GCTATCAGAGAATTGATGGCTAAGGGAACGATCAGGATGGTCTCTGCTCACTCGAGTCAG 180
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 371 GCGATCAGAGAATTGATGGCTAAGGGAACAATCAGGATGGTCTCTGCTCACTCAAGCCAG 430
Query 181 CAGATCTACACTAGGGCAACCCACGGCTAA 210
||||||||||||||||||||||||||||||
Sbjct 431 CAGATCTACACTAGGGCAACCCACGGCTAA 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5