BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328304
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34370.1 | Symbols: ATARI1, ARI1 | RING/U-box superfamily pr... 2870 0.0
AT2G16090.1 | Symbols: ARI2, ATARI2 | RING/U-box superfamily pr... 1375 0.0
> AT4G34370.1 | Symbols: ATARI1, ARI1 | RING/U-box superfamily
protein | chr4:16434333-16437309 FORWARD LENGTH=2280
Length=2280
Score = 2870 bits (1554), Expect = 0.0
Identities = 1716/1796 (96%), Gaps = 4/1796 (0%)
Strand=Plus/Plus
Query 1 ATGGATGATTATTTTAGCGCCGAGGAAGGGGATTGCTATTACTCCTCCGATCAAGAGTCT 60
|||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||
Sbjct 215 ATGGATGATTATTTTAGCGCGGAGGAAGAGGCTTGCTATTACTCCTCCGATCAAGATTCT 274
Query 61 TTGGACGGAATTGATAATGAAGAGTCTGAATTGCATCCTGTGTCGTCCAAAAAATCAAAC 120
||||| ||||||||||||||||||||||||||||| ||| |||| || |||| |||||||
Sbjct 275 TTGGATGGAATTGATAATGAAGAGTCTGAATTGCAGCCTCTGTCCTCTAAAAGATCAAAC 334
Query 121 ACTCAGGTCATCACACAGGAATCGCTTCTGGCAGCACAGAGAGAAGATTTGCTAAGGGTC 180
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 335 ACTCAGGTCATCACTCAGGAATCGCTTCTAGCAGCACAGAGAGAAGATTTGCTAAGGGTG 394
Query 181 ATGGATTTGTTATCGATTAAGGAGCACCATGCGCGGACTCTTCTTATTCATTACCAGTGG 240
||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 395 ATGGAATTGTTATCAATAAAGGAGCACCATGCACGGACTCTTCTTATTCATTACCAGTGG 454
Query 241 GATGTGGAGAAGTTGTTTGCTGTGTTTGTTGAGAAAGGAAAAGATAGCTTGTTTTCTGGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GATGTGGAGAAGTTGTTTGCTGTGTTTGTTGAGAAAGGAAAAGATAGCTTGTTTTCTGGA 514
Query 301 GCTGGTGTCACCGTGTTCGACTGTCAATATGGCAACTCTTCCTTTTCTC-GCTCTTCGCA 359
||||||||||| || ||||| | |||||||||||||||||||||| ||| | ||||| ||
Sbjct 515 GCTGGTGTCACTGTCTTCGATTATCAATATGGCAACTCTTCCTTTCCTCAG-TCTTCACA 573
Query 360 GATGAGTTGTGATGTTTGCATAGAGGATGTACCTGGTGATCAGATGACAAGAATGGACTG 419
||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||
Sbjct 574 GATGAGTTGTGATGTTTGCATGGAGGATTTACCAGGTGATCACATGACAAGAATGGACTG 633
Query 420 TGGCCATTGCTATTGCAATAATTGTTGGACGGAGCATTTTACTGTGCAGATAAATGAAGG 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TGGCCATTGCTTTTGCAATAATTGTTGGACGGAGCATTTTACTGTGCAGATAAATGAAGG 693
Query 480 TCAGAGCAAAAGGATTAGATGCATGGCTCACCAATGCAATGCTATTTGTGATGAAGATAT 539
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 694 TCAGAGCAAAAGGATTAGATGCATGGCTCATCAATGTAATGCTATTTGTGATGAAGATAT 753
Query 540 TGTCAGGAATCTTGTCAGTAAAAAGCGTCCTGATCTAGCTGAGAAGTTTGATCGTTTCCT 599
|||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||| |||
Sbjct 754 TGTCAGGAGTCTAGTCAGTAAAAAGCGTCCAGATCTAGCTGCGAAGTTTGATCGTTACCT 813
Query 600 TCTTGAGTCTTACATCGAAGACAACAAAATGGTCAAGTGGTGTCCAAGCACTCCCCATTG 659
||||||||| ||||||||||| |||| |||||||||||||||||| |||||||| |||||
Sbjct 814 TCTTGAGTCGTACATCGAAGATAACAGAATGGTCAAGTGGTGTCCTAGCACTCCGCATTG 873
Query 660 TGGGAATGCTATACGAGCTGAGGATGACAAGTTGTGCGAAGTTGAATGTTCCTGTGGTCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 874 TGGGAATGCTATACGAGCTGAGGATGACAAGTTGTGCGAAGTTGAATGTTCTTGTGGTCT 933
Query 720 TCAGTTCTGTTTCAGTTGTCTGTGTCAAGCCCACTCCCCTTGCTCTTGTTTGATGTGGGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TCAGTTCTGTTTCAGTTGTCTGTGTCAAGCCCACTCCCCTTGCTCTTGTTTGATGTGGGA 993
Query 780 GTTATGGAGAAAGAAGTGTCGAGATGAGTCTGAGACTATTAATTGGATAACCGTCCACAC 839
|||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct 994 GTTATGGAGAAAGAAGTGTCGAGATGAGTCTGAGACAATCAACTGGATAACCGTTCACAC 1053
Query 840 AAAGCTGTGTCCCAAATGTTACAAACCTGTGGAAAAGAATGGTGGATGCAATCTCGTAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1054 AAAGCTGTGTCCCAAATGTTACAAACCTGTGGAAAAGAATGGTGGATGCAATCTCGTGAG 1113
Query 900 GTGTATTTGTGGGCAGTGTTTTTGTTGGCTATGTGGTGGAGCTACTGGAAGTGATCACAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GTGTATTTGTGGGCAGTGTTTTTGTTGGCTATGTGGTGGAGCTACTGGAAGTGATCACAC 1173
Query 960 TTATAGGAGTATCGCTGGTCACAGTTGTGGTCGGTACCAAGATGACAAAGAGAAGCAGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TTATAGGAGTATCGCTGGTCACAGTTGTGGTCGGTACCAAGATGACAAAGAGAAGCAGAT 1233
Query 1020 GGAAAGAGCGAAGAGGGATTTAGACAGGTATACGCATTATCATCACCGATACAAAGCGCA 1079
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1234 GGAAAGAGCGAAGAGAGATTTAAACAGGTATACGCATTATCATCACCGATACAAAGCTCA 1293
Query 1080 TACGGATTCATCAAAGCTAGAAGATAAACTTAGGGACACTATCCATGAGAAAGTGTCGAA 1139
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1294 TACAGATTCATCAAAGCTAGAAGATAAACTTAGGGATACTATCCATGAGAAAGTGTCGAA 1353
Query 1140 ATCAGAAAAGAGGGAGTTGAAGCTTAAAGACTTCAGTTGGGTCACCAATGGACTCGACCG 1199
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1354 ATCAGAAAAGAGGGAGTTGAAGCTTAAAGACTTCAGCTGGGTCACCAATGGACTCGACCG 1413
Query 1200 GTTATTCAGATCAAGGCGGGTTCTTTCATATTCGTATGCTTTTGCATATTACATGTTTGG 1259
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1414 GTTATTCAGATCAAGGCGAGTTCTTTCATATTCGTATGCTTTTGCATATTATATGTTTGG 1473
Query 1260 GGAAGAGCTGTTCAAAGATGAGATGACCCCTGAGGAGAGAGAGATGAAGAAGAATTTGTT 1319
|||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1474 TGAAGAGATGTTTAAAGATGAGATGACCCCTGAGGAGAGAGAGATAAAGAAGAATTTGTT 1533
Query 1320 TGAGGATCAGCAGCAACAACTTGAAAGTAATGTGGAGAAACTTTCCCAGCTCCTTGAGGA 1379
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1534 TGAGGATCAGCAGCAACAACTTGAAAGTAATGTGGAGAAACTTTCGCAGTTCCTTGAGGA 1593
Query 1380 GCCCTTTGATGAATTTAGTGATGATAAAGTTATGGCAATAAGGATTCAGATCATCAATTT 1439
||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1594 GCCCTTTGATGAATTTAGTAATGATAAAGTTATGGCGATAAGGATTCAAATCATCAATTT 1653
Query 1440 GTCTGTTGCGGTCGATACCCTCTGCAAGAAAATGTACGAGTGCATTGAGAATGACTTACT 1499
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 GTCTGTCGCCGTCGATACACTCTGCAAGAAAATGTACGAGTGCATTGAGAATGACTTACT 1713
Query 1500 CGGATCCCTCCAACTTGGCATCCACAACATCTCACCTTACAGATCAAAGGGAATTGAACA 1559
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1714 CGGATCTCTCCAACTTGGCATCCACAACATCTCACCTTACAGATCGAAGGGAATCGAACA 1773
Query 1560 AGCAGCTCAGTTTTATGCGTCCTGGAATTCCAAAGGTGCTGACAAATTC-ATACCTTTGG 1618
|||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1774 AGCAGCTCAGTTTTATGCTTCCTGGAATTCCAAAGATGCTGACAAATTCCA-ACCTTTGG 1832
Query 1619 ATAGTGGTACAAGCGGAGTGACATCGAGGCCTGAGCAAGCTTCAGGATCAAGGAGCTCGG 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 ATAGTGGTACAAGCGGAGTGACATCGAGGCCTGAGCAAGCTTCAGGATCAAGGAGCTCGG 1892
Query 1679 AAGACACCATTTGCTCATCTTCACAGAAACGTCCCAAAAAAGAAGGAAGCTTCTTAAACA 1738
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1893 AAGACACCATTTGCTCATCTTCACAGAAACGTCCCAAAAAAGAAGGAAGTTTCTTAAACA 1952
Query 1739 ACAAAGTCACTTTATTGGATTTGAACTTGCCAGCTGATTTTATCGACCCGAACTGA 1794
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1953 ACAAAGTCACTTTATTGGATTTGAACTTGCCAGCTGATTTCGTCGACCAGAACTGA 2008
> AT2G16090.1 | Symbols: ARI2, ATARI2 | RING/U-box superfamily
protein | chr2:6986834-6990051 REVERSE LENGTH=2544
Length=2544
Score = 1375 bits (744), Expect = 0.0
Identities = 1347/1630 (83%), Gaps = 73/1630 (4%)
Strand=Plus/Plus
Query 1 ATGGATGATTATTTTAGCGCCGAGGAAGGGGATTGCTATTACTCCTCCGATCAAGAGTCT 60
||||||||| |||| |||| |||||||| |||| |||||||||||||||||| || |||
Sbjct 230 ATGGATGATAATTTAAGCGGCGAGGAAGAAGATTACTATTACTCCTCCGATCAGGAATCT 289
Query 61 TTGGACGGAATTGATAATGAAGAGTCTGAATTGC-AT-CCTGTGTCGTCCAAAAAATCAA 118
| |||| ||||||||||| || || | || | || ||||| || ||| |||||
Sbjct 290 CTCAACGGGATTGATAATGATGAATCCG--TTTCGATACCTGTTTCTTCC---CGATCAA 344
Query 119 ACAC--TC-AGGTCATCAC-ACAGGAATCGCTTCTGGCAGCACAGAGAGAAGATTTGCTA 174
| || || |||| || || | ||||||| ||| |||| |||||||| || |||||||
Sbjct 345 ATACTGTCAAGGTTATTACGA-AGGAATCACTTTTGGCTGCACAGAGGGAGGATTTGCGG 403
Query 175 AGGGTCATGGATTTGTTATCGATTAAGGAGCACCATGCGCGGACTCTTCTTATTCATTAC 234
|| || ||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 404 AGAGTGATGGAATTGTTATCGGTTAAGGAGCACCATGCTCGGACTCTTCTTATACATTAC 463
Query 235 CAG-TGGGATGTGGAGAAGTTGTTTGCTGTGT-TTGTTGAGAAAGGAAAAGATAGCTTGT 292
| | |||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 464 C-GATGGGATGTGGAGAAGTTGTTTGCTGT-TCTTGTTGAGAAAGGGAAAGATAGCTTGT 521
Query 293 TTTCTGGGGCTGGTGTCAC-CGTGTTCGACTGTCAATA-TGGCAACTCTTCCTTTTCTCG 350
||||||| |||||||| || | | || || ||| | | | | |||||| ||||| |
Sbjct 522 TTTCTGGTGCTGGTGTTACACTTCTT-GAAAACCAA-AGTTGTGATTCTTCCGTTTCTGG 579
Query 351 --C-TCTTCGCA-GATGAGTTGTGATGTTTGCATAGAGGATGTACCTGGTGATCAGATGA 406
| |||||| | ||||||||||||| | ||| ||||||||||||| ||| ||||| |||
Sbjct 580 TTCTTCTTCG-ATGATGAGTTGTGATATCTGCGTAGAGGATGTACCGGGTTATCAGCTGA 638
Query 407 CAAGAATGGACTGTGGCCATTGCTATTGCAATAATTGTTGGAC-GGAGCATTTTACTGTG 465
|||| ||||||||||||||| ||| ||||||||| |||||||| || ||||||||||||
Sbjct 639 CAAGGATGGACTGTGGCCATAGCTTTTGCAATAACTGTTGGACTGG-GCATTTTACTGTA 697
Query 466 CAGATAAATGAAGGTCAGAGCAAAAGGATTAGATGCATGGCTCACCAA-TGCAATGCTAT 524
|||||||||||||||||||||||||||||| |||||||||||| || || ||||||||
Sbjct 698 AAGATAAATGAAGGTCAGAGCAAAAGGATTATATGCATGGCTCAT-AAGTGTAATGCTAT 756
Query 525 TTGTGATGAAGATATTGTCAGGAATCTTGTCAGTAAAAAGCGT-CCTGATCTAGCTGAGA 583
||||||||||||| |||||||| ||| || ||||||| || || ||| |||||||||
Sbjct 757 TTGTGATGAAGATGTTGTCAGGGCTCTAGTTAGTAAAA-GCCAACCAGATTTAGCTGAGA 815
Query 584 AGTTTGATCGTTTCCTTCTTGAGTCTTACATCGAAGACAACAAAATGGTCAAGTGGTGTC 643
||||||||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||
Sbjct 816 AGTTTGATCGTTTTCTTCTTGAGTCGTATATCGAAGATAACAAAATGGTGAAGTGGTGTC 875
Query 644 CAAGCACTCCCCATTGTGGGAATGCTATACGAGCTGAGGATGACAAGTTGTGCGAAGTTG 703
| || ||||| |||||||||||||| ||||| | |||||||||| || | || || ||||
Sbjct 876 CGAGTACTCCTCATTGTGGGAATGCCATACGTGTTGAGGATGACGAGCTCTGTGAGGTTG 935
Query 704 AATGTTCCTGTGGTCTT-CAGTTCTGTTTCAGTTGT-CTGTGTCAAGCCCACTCCCCTTG 761
|||| || |||||| || |||||||||||||||||| | | |||||| |||||||||||
Sbjct 936 AATGCTCTTGTGGT-TTGCAGTTCTGTTTCAGTTGTTCA-TCTCAAGCTCACTCCCCTTG 993
Query 762 CTCTTGTTTGATGTGGGAGTTATGGAGAAAGAAGTG-TCGAGATGAGTCTGAGACTATTA 820
||||||| |||||||||| |||||||||||||||| | |||||||| |||||| |||
Sbjct 994 CTCTTGTGTGATGTGGGAACTATGGAGAAAGAAGTGCTTT-GATGAGTCCGAGACTGTTA 1052
Query 821 ATTGGATAACCGTCCACACAAAGCTGTGTCCCAAATGTTACAAACCTGTGGAAAAGAATG 880
|||||||||| || |||||||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct 1053 ATTGGATAACTGTTCACACAAAGCCGTGTCCCAAATGTCACAAGCCTGTTGAAAAGAATG 1112
Query 881 GTGGATGCAATCTCGTAAGGTGTATTTGTGGGCAGTGTTTTTGTTGGCTATGTGGTGGAG 940
|||||||||||||||| | ||| ||||| | || | |||||||||| | ||||||| ||
Sbjct 1113 GTGGATGCAATCTCGTGACTTGTCTTTGTCGACAATCTTTTTGTTGGTTGTGTGGTGAAG 1172
Query 941 CTACTGGAAGTGATCACACTTATAGG--AGTATCGCTGGTCACAGTTGTGGTCGGTACCA 998
|||||||||| || ||||||| || || ||| | ||||| ||||||||||||| |||
Sbjct 1173 CTACTGGAAGGGACCACACTTG--GGCTAGAATCTCGGGTCATAGTTGTGGTCGGTTCCA 1230
Query 999 AGATGACAAAGAGAAGCAGATGGAAAGAGCGAAGAGGGATTT-A-GACAGGTATACGCAT 1056
||| || |||||||| || ||||| |||||||| |||||| | | | | |||||| ||||
Sbjct 1231 AGAAGATAAAGAGAAACAAATGGAGAGAGCGAAAAGGGATCTCAAG-C-GGTATATGCAT 1288
Query 1057 TATCATCACCGATACAAAGCGCATA-CGGATTCATCAAAGCTAGAAGATAAACTTAGGGA 1115
|||||| ||||||||||||| |||| || | || || |||||||| | ||| ||||| |
Sbjct 1289 TATCATAACCGATACAAAGCACATATCG-ACTCCTCCAAGCTAGAGGCTAAGCTTAGTAA 1347
Query 1116 CACTATCCA-TGAGAAAG-TGTCGAAATCAGAAAAGAGGGAGTTG-AAGCTTAAAGACTT 1172
| ||| | | | |||| |||| | ||||||||||||||||| || |||||||||||
Sbjct 1348 TAATATT-AGTAA-AAAGGTGTCTATTTCAGAAAAGAGGGAGTTACAA-CTTAAAGACTT 1404
Query 1173 CAGTTGGG-TCACCAATGGACTCGACCGGTTATTCAGATCAAGGCGGGTTCTTTCATATT 1231
||| |||| | |||||||||||| | |||||||| |||||||| || |||||||||||||
Sbjct 1405 CAGCTGGGCT-ACCAATGGACTCCATCGGTTATTTAGATCAAGACGAGTTCTTTCATATT 1463
Query 1232 CGTATGCTTTTGCATATTACATGTTTGGGGAAGAGCTGTTCAAAGATGAGATGACCCCTG 1291
| || |||| |||| |||||||||||| || |||||||| ||||||||||||| | |||
Sbjct 1464 CATACCCTTTCGCATTTTACATGTTTGGAGATGAGCTGTTTAAAGATGAGATGAGCTCTG 1523
Query 1292 AGGAGAGAGAGATGAAG-AAGAATTTGTTTGAGGATCAGCAGCAACAACTTGAAAG-TAA 1349
|||| ||||| || || || ||| ||||||||||||||||||| || ||||| | |||
Sbjct 1524 AGGAAAGAGAAATAAAACAA-AATCTGTTTGAGGATCAGCAGCAGCAGCTTGAG-GCTAA 1581
Query 1350 TGTGGAGAAACTTTCCCAGCTCCTTG-AGGAGCCCTTTGATGAATTTAG-TGATGATAAA 1407
||| ||||||||||| || || ||| |||| || |||||| ||||| | |||||||||
Sbjct 1582 TGTTGAGAAACTTTCTAAGTTC-TTGGAGGAACCTTTTGATCAATTT-GCTGATGATAAG 1639
Query 1408 GTTATGGCA-ATAAGGATTCA-GATCATCAATTTGTCTGTTGCGGTCGATACCCTCTGCA 1465
|| ||| || ||||||||||| | ||||||||||||| |||||||||||||| ||||||
Sbjct 1640 GTCATG-CAGATAAGGATTCAAG-TCATCAATTTGTCAGTTGCGGTCGATACACTCTGCG 1697
Query 1466 AGAAA-ATGTACGAGTGCATTGAGAATGACTTACTCGGATCCCTCCAACTTGGCATCCAC 1524
| ||| ||||| || ||||||||||||||||| | || || || |||||||||||||||
Sbjct 1698 A-AAATATGTATGAATGCATTGAGAATGACTTGTTGGGTTCTCTGCAACTTGGCATCCAC 1756
Query 1525 AACATCT-CACCTTACAGATCAAAGGGAATTGAACAAGCAGCTCAGTTTTATGCGT-CCT 1582
||||| | | || ||||||||||| || || |||| |||| || | |||||| || ||
Sbjct 1757 AACAT-TACTCCATACAGATCAAACGGCATAGAACGAGCATCTGATTTTTATA-GTTCCC 1814
Query 1583 GGAATTCCAA 1592
|||||||||
Sbjct 1815 AGAATTCCAA 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5