BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328320
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73700.1 | Symbols: | MATE efflux family protein | chr1:277... 1103 0.0
AT5G52450.1 | Symbols: | MATE efflux family protein | chr5:212... 867 0.0
> AT1G73700.1 | Symbols: | MATE efflux family protein | chr1:27717380-27719648
REVERSE LENGTH=1623
Length=1623
Score = 1103 bits (597), Expect = 0.0
Identities = 1100/1340 (82%), Gaps = 45/1340 (3%)
Strand=Plus/Plus
Query 14 GTGTCAAGGAAGAGGTGAAGAAGCAGTTTTGGCTCTCTGCTCCACTCATCGGCGTCAGCC 73
|||| ||||| ||||||||||||||| | ||||| |||||||||||||| || || ||||
Sbjct 77 GTGTGAAGGAGGAGGTGAAGAAGCAGCTATGGCTTTCTGCTCCACTCATTGGTGTTAGCC 136
Query 74 TCCTCCAATATTCTCTCCAAGTTATCTCCGTCATGTTCGTCGGCCATCTCGGCTCTCTTC 133
| || ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 137 TTCTTCAATACTCTCTCCAAGTCATCTCCGTCATGTTCGTTGGCCATCTTGGCTCTCTTC 196
Query 134 CTCTCTCCGCCGCCTCCATCGCCACCT-CTTTCGCCTCCGTCACCGGCTTCACTTTCCTG 192
||||||| |||||||| |||||||||| |||| |||||||| ||||||||||| |||||
Sbjct 197 CTCTCTCTGCCGCCTCTATCGCCACCTCCTTT-GCCTCCGTTACCGGCTTCACCTTCCTC 255
Query 193 ATGGGTACAGCGAGTGCGTTGGAGACACTTTGTGGGCAATCTTACGGAGCAAAGA-TGTA 251
|||| ||||| ||||| ||||||||||| ||||| ||| ||||||||||||| | | ||
Sbjct 256 TTGGGAACAGCAAGTGCATTGGAGACACTATGTGGCCAAGCTTACGGAGCAAA-ACTATA 314
Query 252 TGGGAAGCTAGGCATTTTCATGCAGAGAGCTATGTTTGTTCTGCTCATACTTTCAATTCC 311
||| || | || ||| ||||||||||| |||||||| || || ||||| || ||||
Sbjct 315 TGGAAAATTGGGAATTCAAATGCAGAGAGCAATGTTTGTACTTCTTATACTCTCTGTTCC 374
Query 312 TCTCTCGATGGTTTGGTTTTACACTGAGGACATTCTCGTCTTTGTCCACCAAGACAAGTC 371
|||||| || ||||| | |||| || | |||||||| || ||||| |||||||||||
Sbjct 375 TCTCTCAATCATTTGGGCTAACACAGAACAGATTCTCGTATTGGTCCATCAAGACAAGTC 434
Query 372 CATAGCGAGACTTGCAGGCTCATACGCTAGATACATGATCCCTAGCATCTACGCCTACGC 431
||| || || |||| ||||| ||||||| |||||||||||| ||| ||| ||||||||
Sbjct 435 CATTGCAAGTGTTGCTGGCTCCTACGCTAAATACATGATCCCGAGCCTCTTCGCCTACG- 493
Query 432 G-CTTCTTCAATGCCTAAACAGGTTCTTGCAAACGCAAAACAATGTGTTCCCTGTATTTG 490
| || |||||||| | ||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct 494 GACTGCTTCAATGTATCAACAGGTTCTTGCAAGCGCAGAACAATGTGTTCCCTGTCTTTG 553
Query 491 TGTCCTCTGGAATCACTACTTGTCTTCACGTT-CTTCTTTGTTGGGTCTTCGTGTGGAAG 549
| | |||||| |||||||| |||||||| || ||||| |||||| | || |||| ||||
Sbjct 554 TCTGCTCTGGTATCACTACATGTCTTCA-TTTGCTTCTCTGTTGGTTGTTTGTGTTGAAG 612
Query 550 TCTGGTTTAGGACACAGGGGAGCTGCTCTTGCTATCTCTGTCTCTTATTGGGTCAATGTC 609
||||||||||| |||| ||||||||||||||||| || |||||||| ||| |||| |||
Sbjct 613 ACTGGTTTAGGATACAGAGGAGCTGCTCTTGCTATTTCGGTCTCTTACTGGTTCAACGTC 672
Query 610 ATTCTCCTCTCGTGTTATGTCAAGTTCTCAGC-TTCTTGCTCACAAACTTGGACTGG-TT 667
|||||||||||||||||||||||||| || || ||||||||| || | |||||| || ||
Sbjct 673 ATTCTCCTCTCGTGTTATGTCAAGTTTTC-GCCTTCTTGCTCGCATAGTTGGACCGGGTT 731
Query 668 TCTCTAAAGAGTCTTTT-A-GCCACATCCCTGCTTT-TATGAAGCTCGGTTTTCCTTCTG 724
| || |||||| ||||| | | || | || ||| | | || | | ||||||||| |
Sbjct 732 T-TCGAAAGAGGCTTTTCAAGA-ACTTTA-TGATTTCTCTAAAATT-GCTTTTCCTTCAG 787
Query 725 CGGTTATGGTCTGCTTAGAGCTCTGGTCGTTTGAGCTTTTGGTTCTCTTG--TCAGGC-T 781
|||| |||||||| || ||||| ||||| || |||||| ||||||| | | |||||| |
Sbjct 788 CGGTCATGGTCTGTTTGGAGCTTTGGTCCTTCGAGCTTCTGGTTCT-T-GCCTCAGGCCT 845
Query 782 TACTTCCCAATCCGGTTTTAGAAACTTCAACT-CTTTCAATCTGCCTTAATACATCATTA 840
| ||||| || ||||||||||||||||| | ||||||||||| || ||||| || ||
Sbjct 846 T-CTTCCTAACCCGGTTTTAGAAACTTCGG-TGCTTTCAATCTGTCTAAATACTTCCCTA 903
Query 841 ACTGTCTGG-ATGATCCCGGTTGGCCTTGGTGGCACAGCAAGCACGAGGATCTCGAACGA 899
|| ||||| | ||| ||||||| ||||||||| | ||||||| ||| |||| |||||
Sbjct 904 ACAATCTGGCA-GATTTCGGTTGGTCTTGGTGGCGCTGCAAGCATAAGGGTCTCAAACGA 962
Query 900 GTTAGGAGCAGGGAATCCAAAAG-GCGCAAAGCTGGCTGTACGTGTGGTTGTAGCCACAG 958
||||||||||||||||||| ||| | ||||| ||||||||| ||| |||||| || ||
Sbjct 963 GTTAGGAGCAGGGAATCCACAAGTG-GCAAAACTGGCTGTATATGTCATTGTAGGCATAG 1021
Query 959 TAGTTGTAGAGGGTATTATGATTGGATCGGTTTTGTTGGCGATTCGGAATAAATTGGGAT 1018
||| | ||||| ||| || ||| | | ||||||||| |||||||||| | || || |
Sbjct 1022 CAGTAGCCGAGGGAATTGTGGTTGTAACAGTTTTGTTGTCGATTCGGAAGATCTTAGG-T 1080
Query 1019 -ATGCTTTCAGCAGCGATCC-AAAAGTCATCAAATATGTAGCATCGATGATACCAATTGT 1076
||||||| |||||||| || |||| ||||| ||||| ||||| |||||||| |||||
Sbjct 1081 CATGCTTTTAGCAGCGACCCGAAAA-TCATCGCATATGCCGCATCAATGATACCGATTGT 1139
Query 1077 CGC-TGCAGGCAACTTCCTCGACGGATTCCAATGCGTTCTGTCAGGGGTTGCTAGAGGAT 1135
|| || || |||||||| || || || |||||||| || |||||||||||||||||||
Sbjct 1140 TGCATGT-GGAAACTTCCTTGATGGCTTACAATGCGTACTCTCAGGGGTTGCTAGAGGAT 1198
Query 1136 GTGGATGGCAGAAGATTGGAGCTTGTGTGAATCTCGGCTCATATTATCTAGTTGGAGTTC 1195
||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 1199 GTGGATGGCAGAAAATTGGAGCATGTGTGAATCTTGGATCATATTATCTTGTTGGAGTTC 1258
Query 1196 CACTGGGGTTATTACTCGGTTTCCATTTACATTTTGGTGGTCGGGGCCTTTGGCTTGGAA 1255
|| | || || ||||| ||||||||||| || ||||||||||||| |||||||| ||||
Sbjct 1259 CATTAGGATTGTTACTTGGTTTCCATTTCCACATTGGTGGTCGGGGGCTTTGGCTGGGAA 1318
Query 1256 TCGTATCAGCCTTAGT-TGTTCAAGTGCTGTCTCTTTCCATCA-TCAC-ATTAGTT-ACA 1311
||||| |||| || || |||||||||| ||| ||||||| | | |||| || | || |||
Sbjct 1319 TCGTAACAGCATT-GTCTGTTCAAGTGTTGTGTCTTTCCTT-AGTCACTAT-A-TTCACA 1374
Query 1312 AACTGGGATAAAGAG-CAAA 1330
||||||||||||||| ||||
Sbjct 1375 AACTGGGATAAAGAGGCAAA 1394
> AT5G52450.1 | Symbols: | MATE efflux family protein | chr5:21288898-21291862
REVERSE LENGTH=1718
Length=1718
Score = 867 bits (469), Expect = 0.0
Identities = 1068/1351 (79%), Gaps = 65/1351 (5%)
Strand=Plus/Plus
Query 9 AAA-TAGTGTCAAGGAAGAGGTGAAGAAGCAGTTTTGGCTCTC-TGCTCCACTCATCGGC 66
||| ||||||||||||||| |||||||||||| | ||||| || || |||||||||| |
Sbjct 172 AAAGTAGTGTCAAGGAAGAAGTGAAGAAGCAGCTATGGCTTTCAGGC-CCACTCATCGCC 230
Query 67 GTCAGCCTCCTCCAATATTCTCTCCAAGTTATCTCCGTCATGTTCGTCGGCCATCTCGGC 126
|| || || || || | || ||| ||||||||||||||||||||||| |||||||| |||
Sbjct 231 GTGAGTCTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCATGTTCGTTGGCCATCTTGGC 290
Query 127 TCTCTTCCTCTCTCCGCCGCCTCCATCGCCACCTCTTTCGCCTCCGTCACCGGCTTCA-C 185
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 291 TCTCTTCCTCTCTCCGCCGCATCCATCGCCACCTCTTTCGCCTCCGTCACCGGTTTCAGC 350
Query 186 TTTCCTGATGGGTACAGCGAGTGCGTTGGAGACACTTTGTGGGCAATCTTACGGAGCAAA 245
||||| ||||| ||||| |||||||| || || |||||||| ||| | |||||||||||
Sbjct 351 -TTCCTCATGGGAACAGCAAGTGCGTTAGATACGCTTTGTGGCCAAGCGTACGGAGCAAA 409
Query 246 GATGTATGGGAA-GCTAGGCATTTTCATGCAGAGAGCTATGTTTGTTC-TGCTCATA-CT 302
|| ||| |||| | |||| || ||||| |||||||||||||||| | | | || |
Sbjct 410 GAAGTA-CGGAATGTTAGGAATACAAATGCAAAGAGCTATGTTTGTTCTTACAC-TAGC- 466
Query 303 TTCAATTCCTCTCTCGATGGTTTGGTTTTACACTGAGGACATTCTCGTCTT-TGTCCACC 361
||| ||||||||||| || ||||| | |||| ||| || |||||||||| | | | |
Sbjct 467 TTCTATTCCTCTCTCCATCATTTGGGCTAACACAGAGCACCTTCTCGTCTTCTTTGGA-C 525
Query 362 AAGACAAGTCCATAGCGAGACTTGCAGGCTCATACGCTAGATACATGATCCCTAGCATCT 421
|| |||| ||||| || | ||| || ||||| ||||| | || ||||||||| |||||||
Sbjct 526 AAAACAAATCCATTGCTACACTCGCTGGCTCCTACGCAAAATTCATGATCCCAAGCATCT 585
Query 422 ACGCCTACGCG-CTTCTTCAATGCCTAAACAGGTTCTTGCAAACGCAAAACAATGTGTTC 480
|||||||| | |||||||||||| | |||||||||||||| | ||||||||||||||
Sbjct 586 TCGCCTACG-GTCTTCTTCAATGCTTTAACAGGTTCTTGCAGGCCCAAAACAATGTGTTT 644
Query 481 CCTGT-ATTTGTGTCCTCTGGAATCACTACTTGTCTTCACGTTCTTCTTTGTTGGGTCTT 539
||||| ||| | | ||||||| | || |||| ||| || || || ||||||||||||||
Sbjct 645 CCTGTGGTTT-TCTGCTCTGGAGTAACAACTTCTCTACATGTCCTCCTTTGTTGGGTCTT 703
Query 540 CGTGTGGAAGTCTGGTTTA-GGACACAGGGGAGCTGCTCTTGCTATCTCTGTCTCTTATT 598
|| | || ||||||||| || || |||||||||||||| | ||| | || ||||
Sbjct 704 GGTTTTCAAATCTGGTTTAGGGTTTCA-AGGAGCTGCTCTTGCCAACTCCATTTCGTATT 762
Query 599 GGGTCAATGTCATTCTCCT-CTCGTGTTATGTCAAGTTCTCAG-CTTCTTGCTCACAAAC 656
|| | |||||| ||||| | || ||||| |||||||| || | |||||||||||| |||
Sbjct 763 GGCTTAATGTCGTTCTCTTGTTC-TGTTACGTCAAGTTTTC-GCCTTCTTGCTCACTAAC 820
Query 657 TTGGACTGGTTTCTCTAAAGAGTCTTTTA-GCCACATCCCT-GCTTTTATGAAG-CTCGG 713
|||||| ||||||||||| ||| | | || || | || ||| ||||| || || || |
Sbjct 821 TTGGACCGGTTTCTCTAAGGAGGC-TCTACGCGATAT-CCTCCCTTTTCTG-AGACTAGC 877
Query 714 TTTTCCTTCTGCGGTTATGGTCTGCTTAGAGCTCTGGTCGTTTGAGCTTTTGGTTCTCTT 773
| |||||||||| ||||||||||||||||| | ||||| ||||| ||||| ||||||||
Sbjct 878 TGTTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAACTTTTAGTTCTCTT 937
Query 774 GTCAGG-CTTACTTCCCAATCCGGTTTTAGAAACTTCAACTCTTTCAATCTGCCTTAATA 832
||||| ||| ||||| || |||||| |||||||||| ||| ||||||||||||||||
Sbjct 938 ATCAGGACTT-CTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCTCAATCTGCCTTAATA 996
Query 833 CATCATTAACTGTCTGGATGATCCCGGTTGGCCTTGGTGGCACAGCAAGCACGAGGATCT 892
||||| ||| | ||||||||||| |||| || ||||| | ||||||||||||||||
Sbjct 997 CATCAGGAACAATGTGGATGATCCCATTTGGTCTAAGTGGCGCTGCAAGCACGAGGATCT 1056
Query 893 CGAACGAGTTAGGAGCAGGG-AATCCAAAAG-GCGCAAAGCTGGCTGTACGTGTGGT--T 948
| || || |||||||| ||| || || |||| | || ||||| || || |||||||| |
Sbjct 1057 CAAATGAATTAGGAGC-GGGTAACCCGAAAGTG-GCTAAGCTTGCGGTGCGTGTGGTCAT 1114
Query 949 GTAGCCACAGTAGTTGTAGAGGGTATTA-TGATTGGATCGGTTTTGTTGGCGATTCGGAA 1007
| | || | ||| | ||| ||| || |||| ||||| || ||| | ||| ||||
Sbjct 1115 -TTG-CATTGCAGTAGCAGAAAGTA-TAGTGATCGGATCAGTCTTGATATTGATAAGGAA 1171
Query 1008 TAAATTGGGA-TATGCTT-TCAGCAGCGATCCAAAAGTCA-TCAAATATGTAGCATCGAT 1064
|| || |||| || |||| | || || || | | |||| | ||| || ||||| |||||
Sbjct 1172 TATATGGGGATTA-GCTTAT-AGTAGTGAACTAGAAGT-AGTCAGCTACGTAGCCTCGAT 1228
Query 1065 GATACCAATTGTCG-CTGCAGGCAACTTCCTCGAC-GGATTCCAATGCGTTCTGTCAGGG 1122
||| |||||| ||| || ||| || || || ||| | || ||||||||||| ||||||
Sbjct 1229 GATGCCAATTCTCGCCT-TAGGAAATTTTCTAGACAGTCTT-CAATGCGTTCTCTCAGGG 1286
Query 1123 GTTGCTAGAGGATGTGGATGGCAGAAGATTGGAGCT-TG-TGTGAATCTCGGCTCATATT 1180
||||||||||||||||||||||||||||| ||||| | | | ||||| || |||||||
Sbjct 1287 GTTGCTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCAT-T-AATCTTGGTTCATATT 1344
Query 1181 ATCTAGTTGGAGTTCCA-CTGGGGTTATTACTCGGTTTCCA-TTTACATTTTGGTGGTCG 1238
|||| ||||||||||| | || || ||||| | ||| || ||| || ||||||||||
Sbjct 1345 ATCTTGTTGGAGTTCCTTCAGGA-TTGTTACTTGCTTTTCACTTT-CACGTTGGTGGTCG 1402
Query 1239 GGGCCTTTGGCTTGGAATCGTATCAGCCTTAGTTGTTCAAGTGCT-GTCTCTTT-CCATC 1296
||| ||||||||||||||| ||| ||| | ||||||||||| | | |||| || ||
Sbjct 1403 GGGGCTTTGGCTTGGAATCATATGTGCCCTCGTTGTTCAAGTTTTTGG-TCTTGGCC-TC 1460
Query 1297 ATCAC-ATTAGTTACAAACTGGGATAAAGAG 1326
|||| ||| ||||||| |||||| |||||
Sbjct 1461 GTCACTATTT-TTACAAATTGGGATGAAGAG 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5