BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328326
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34180.1 | Symbols: | Cyclase family protein | chr4:1636935... 1120 0.0
AT1G44542.1 | Symbols: | Cyclase family protein | chr1:1686497... 704 0.0
> AT4G34180.1 | Symbols: | Cyclase family protein | chr4:16369357-16371430
REVERSE LENGTH=1419
Length=1419
Score = 1120 bits (606), Expect = 0.0
Identities = 644/663 (97%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 79 GAAGGAGGTAAGATATACGATATCAGCCACCGTTACACGCCGGAGATTCCAGCTTGGGAA 138
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 153 GAAGGAGGTAAGATATACGACATCAGCCATCGTTACACGCCGGAGATTCCAGCTTGGGAA 212
Query 139 TCTTCGGAGGGATTGGGAAAGACGTTCTTGCGATTAGCCGCGAGTATGAAGAATGGATCA 198
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 213 TCTTCGGAAGGATTGGGAAAGACGTTCCTGCGATTAGCCGCGAGTATGAAGAATGGATCA 272
Query 199 TTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACTCACGTCGATGCTCCA 258
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 273 TTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACTCACGTGGATGCTCCA 332
Query 259 GGTCACTTCTGGGACAATTATTACGACGCTGGTTTTGATACTGATTCGCTTGATCTTCAA 318
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 333 GGTCACTTTTGGGATAATTATTACGATGCTGGTTTTGATACTGATTCGCTTGATCTCCAA 392
Query 319 GTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCAAGAGATAAGAACATTACTGCTGAG 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 393 GTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCGAGAGATAAGAACATTACTGCTGAG 452
Query 379 GTAATGGAATCGCTTCATATTCAAAGAGGAGTTCGTCGTGTGCTCTTTAGAACATCCAAC 438
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 453 GTAATGGAATCACTTCATATACAAAGAGGAGTTCGTCGTGTGCTCTTTAGAACATCCAAC 512
Query 439 ACTGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCTTTGCTGGGTTCATGACC 498
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 ACCGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCTTTGCTGGGTTCATGACC 572
Query 499 GATGGGGCGAAATGGTTGGTTGAGAACACAGACATCAAACTTATTGGGCTTGATTATCTT 558
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 573 GATGGGGCTAAATGGTTGGTTGAGAATACAGACATCAAACTTATTGGGCTTGATTATCTT 632
Query 559 TCCTTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTATACTTAAAGGACGGGAT 618
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TCATTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTATACTTAAAGGACGGGAT 692
Query 619 ATAATCCCTGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAGGAACATACTCGCTTCAT 678
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ATAATCCCAGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAGGAACATACTCGCTTCAT 752
Query 679 TGCTTACCGTTGAGATTGGTTGGAGCGGAAGGAGCACCGACAAGATGCATTCTCATCAAG 738
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGCTTACCGCTGAGATTAGTTGGAGCGGAAGGAGCACCGACAAGATGCATTCTCATCAAG 812
Query 739 TGA 741
|||
Sbjct 813 TGA 815
> AT1G44542.1 | Symbols: | Cyclase family protein | chr1:16864970-16866605
REVERSE LENGTH=1023
Length=1023
Score = 704 bits (381), Expect = 0.0
Identities = 585/681 (86%), Gaps = 24/681 (4%)
Strand=Plus/Plus
Query 73 GTTTATGAAGGAG---GTAAGATATACGATATCAGCCACC-GTTACACGCCGGAGATT-C 127
|||||||| |||| | ||||||||||| |||||||||| | |||||||||||| || |
Sbjct 180 GTTTATGACGGAGAAAGGAAGATATACGACATCAGCCACCAG-TACACGCCGGAG-TTGC 237
Query 128 CAGCTTGGGAATCTTCGGAGGGA-TTGGGAAAGACGTTCTTGCGA-TTAGCCGCGAGTAT 185
| | |||||| ||||| || ||| | ||| | || ||||| || || |||| ||||||
Sbjct 238 CGGTTTGGGAGTCTTCAGAAGGACTAGGG--A-ACTTTCTT-AGACTT-GCCGTGAGTAT 292
Query 186 GAAGAATGGAT-C-ATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACT 243
||||||||||| | | | ||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 293 GAAGAATGGATCCGA-T-GCTAATATCTCGAAGATGGAACTATCTGTTCACTCTGGAACT 350
Query 244 CACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGACG-CTGGTTTTGATACTGA 302
|| || ||||| ||||| || ||| ||| ||||||| || | ||||||||||||||||
Sbjct 351 CATGTTGATGCACCAGGCCATTTCCATGACCATTATTATGA-GTCTGGTTTTGATACTGA 409
Query 303 TTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCAAGAGATAA 362
||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 410 TTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTATTGGTTGATGTTCCAAGAGATAA 469
Query 363 GAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAGAGGAGTTC-GTCGTGTGC 421
||||||| | |||||||| ||| |||| || ||||||| |||||| | || ||||||| |
Sbjct 470 GAACATTTCAGCTGAGGTTATGAAATCACTACATATTCCAAGAGG-GATCCGTCGTGTTC 528
Query 422 TCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCT 481
|||||| ||||| |||||||| | | ||||||||||||||||||| |||||||||||||
Sbjct 529 TCTTTAAAACATTGAACACTGATAGGAGGCTTATGTTTAAGAAAGAATTTGATTCAAGCT 588
Query 482 TTG-CTGGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAGAACACAGACATCAAACTT 540
||| | ||||| ||| |||||||||||||||||||||||| || |||||||||||||||
Sbjct 589 TTGTC-GGGTTTATGGTCGATGGGGCGAAATGGTTGGTTGAAAATACAGACATCAAACTT 647
Query 541 ATTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTT 600
||||||||||||||||||| |||||||||| ||| ||| ||||||| || || ||| ||
Sbjct 648 GTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATGAAGCACCTGCGACGCATAGGTTT 707
Query 601 ATACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTA 660
|||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 708 ATACTTGAACGACGGGATATAATCCCTGTCGAAGCGCTGAAGCTGGATGACGTGGAGGTA 767
Query 661 GGAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGAGCGGAAGGAGCACCGACA 720
|||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 768 GGAATGTACACGCTTCATTGCTTACCGTTAAGATTGGTTGGAGCGGAAGGAGCACCAACG 827
Query 721 AGATGCATTCTCATCAAGTGA 741
|||||||||||||||||||||
Sbjct 828 AGATGCATTCTCATCAAGTGA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5