BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328341
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34030.1 | Symbols: MCCB | 3-methylcrotonyl-CoA carboxylase ... 1258 0.0
> AT4G34030.1 | Symbols: MCCB | 3-methylcrotonyl-CoA carboxylase
| chr4:16301179-16304099 FORWARD LENGTH=2033
Length=2033
Score = 1258 bits (681), Expect = 0.0
Identities = 760/799 (95%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 1 ATGTTGAGAATTTTAAGGAGAAGAGTAGTTTCAGTTTCTG-AAGAGCTTACTAGTATTCA 59
||||| || ||||| |||||||||| ||||||| ||| | |||||||||||||||||||
Sbjct 120 ATGTTAAGGATTTTGGGGAGAAGAGTTGTTTCAGCTTC-GAAAGAGCTTACTAGTATTCA 178
Query 60 ACAATGGCGGATCCGACCAGGAACCGATTCTCGGCCCGATCCTTTTCGAATTTTCCGGGG 119
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 179 ACAATGGCGGATCCGACCAGGAACCGATTCTCGTCCCGATCCTTTTCGAACTTTCCGGGG 238
Query 120 ACTACAGAAGGGTTTCTGCGTGGGCGTTCTCCCTGACGGAGTCGATAGAAATTCGGAGGC 179
|||||| |||||||||||||||||| || | || ||||||||||| ||||||||||||||
Sbjct 239 ACTACAAAAGGGTTTCTGCGTGGGCATTTTACCGGACGGAGTCGACAGAAATTCGGAGGC 298
Query 180 TTTTTCTAGTAACTCGATCGCCATGGAAGGGATCTTATCGGAGCTTCGTTCCCACATCAA 239
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 TTTTTCTAGCAATTCGATCGCCATGGAAGGGATCTTATCGGAGCTTCGTTCCCATATCAA 358
Query 240 AAAGGTGTTGGCCGGAGGTGGAGAGGAAGCGGTGAAGAGGAACAGAAGCAGAAACAAGCT 299
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 AAAGGTATTGGCCGGAGGTGGAGAGGAAGCGGTTAAGAGGAACAGAAGCAGAAACAAGCT 418
Query 300 TTTGCCTAGAGAAAGGATTGATCGGCTTCTTGATCCTGGTTCTTCCTTTTTGGAGCTCTC 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 TTTGCCTAGAGAAAGGATTGATCGGCTACTTGATCCTGGTTCTTCCTTTTTGGAGCTCTC 478
Query 360 TCAGCTTGCAGGACATGAATTGTATGAGGAGCCTTTACCTTCAGGTGGGATAATCACAGG 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 TCAGCTTGCAGGACATGAATTGTATGAGGAGCCTTTGCCTTCAGGTGGGATAATCACAGG 538
Query 420 GATTGGACCAATTCATGGCCGTCTTTGTATGTTTATGGCAAATGATCCTACTGTCAAAGG 479
||| |||||||| ||||| ||| |||||||||||||||||||||||||||| || |||||
Sbjct 539 GATAGGACCAATCCATGGACGTATTTGTATGTTTATGGCAAATGATCCTACAGTTAAAGG 598
Query 480 AGGGACTTATTATCCCATTACTATCAAGAAACATCTCAGGGCACAAGAGATTGCTGCTCG 539
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 AGGGACGTATTATCCCATTACTATCAAGAAACATCTCAGAGCACAAGAGATTGCTGCTCG 658
Query 540 GTGTAGACTCCCTTGCATATATCTTGTTGATAGTGGTGGTGCTTACCTTCCAAAACAGGC 599
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTGCAGACTTCCTTGCATATATCTTGTTGATAGTGGTGGTGCTTACCTTCCAAAACAGGC 718
Query 600 CGAGGTTTTCCCTGACAAGGAGAATTTTGGTAGGGTTTTCTACAACGAATCCGTTATGTC 659
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 TGAGGTTTTCCCTGACAAGGAGAATTTTGGTAGGGTTTTCTACAACGAATCGGTTATGTC 778
Query 660 ATCTGATGGAATTCCACAAATCGCCATTGTTTTAGGCTCCTGCACTGCTGGTGGTGCCTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCTGATGGAATTCCACAAATCGCCATTGTTTTAGGCTCCTGCACTGCTGGTGGTGCCTA 838
Query 720 TATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTGGC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 CATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGC 898
Query 780 AGGACCTCCACTTGTTAAG 798
|||||| |||||||| |||
Sbjct 899 AGGACCGCCACTTGTCAAG 917
Score = 1208 bits (654), Expect = 0.0
Identities = 690/708 (97%), Gaps = 0/708 (0%)
Strand=Plus/Plus
Query 839 AGGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACGGTTCACTGTA 898
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 916 AGGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTA 975
Query 899 CTGTGTCCGGTGTGTCGGATTATTTTGCTCAAGACGAGCTACATGGACTCGCTATTGGAA 958
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 976 CTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGACGAGCTACATGGCCTCGCTATTGGAA 1035
Query 959 GAAACATTGTCAAGAATTTGCACATGGCTGCAAAACAGGGGATGGAAGGAACATTTGGAA 1018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1036 GAAACATTGTCAAGAATTTGCACATGGCTGCAAAACAAGGGATGGAAGGAACATTTGGAA 1095
Query 1019 GCAAAAATCTTGTATACAAGGAACCGCTCTATGACATAGACGAGCTTCGCTCCATTGCTC 1078
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1096 GCAAAAATCTTGTATACAAGGAACCGCTCTATGACATAAACGAGCTTCGCTCCATTGCTC 1155
Query 1079 CAGTAGATCACAAGCAGCAATTTGATGTGCGGTCTATTATTGCTCGGATTGTTGATGGAA 1138
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1156 CAGTAGATCACAAACAGCAATTTGATGTGCGGTCTATTATTGCCCGGATTGTTGATGGAA 1215
Query 1139 GTGAATTTGATGAGTTCAAGAAACAATACGGCACTACGCTTGTGACTGGTTTTGCTAGGA 1198
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1216 GTGAATTTGACGAGTTCAAGAAACAATACGGCACTACGCTTGTGACTGGTTTTGCTAGAA 1275
Query 1199 TTTATGGTCAGACTGTGGGAATTATCGGGAACAATGGCATACTGTTCAATGAATCTGCAC 1258
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 TTTATGGTCAGACGGTGGGTATTATCGGGAACAATGGCATACTGTTCAATGAATCTGCAC 1335
Query 1259 TAAAAGGAGCTCACTTCATCGAATTATGTTCCCAACGTAAAATTCCTCTTGTTTTCCTCC 1318
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1336 TAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCC 1395
Query 1319 AAAACATCACAGGCTTTATGGTGGGTTCAAGAGCTGAGGCCAATGGCATTGCAAAAGCTG 1378
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1396 AAAACATCACAGGCTTTATGGTGGGTTCTAGAGCTGAGGCCAACGGCATTGCAAAAGCTG 1455
Query 1379 GAGCGAAAATGGTGATGGCAGTATCTTGTGCTAAGGTACCAAAGATTACAATTATAACAG 1438
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1456 GAGCGAAAATGGTGATGGCAGTATCCTGTGCTAAGGTACCAAAGATTACAATCATAACGG 1515
Query 1439 GTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 GTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTA 1575
Query 1499 TGTTCATTTGGCCAAACGCCAGAATTGGCATCATGGGCGGCGCTCAGG 1546
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1576 TGTTCATTTGGCCAAACGCCAGAATTGGCATCATGGGAGGCGCTCAGG 1623
Score = 449 bits (243), Expect = 4e-125
Identities = 255/261 (98%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1621 GCTGCGGGTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGTGG 1680
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 GCTGCAGGTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGTGG 1682
Query 1681 ACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 ACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCA 1742
Query 1741 AATCCTTACTTCTCGACGGCGAGGCTTTGGGATGATGGAATGATTGATCCTTGTGATACC 1800
|||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1743 AATCCTTACTACTCGACGGCGAGACTTTGGGATGATGGAGTGATTGATCCTTGTGATACC 1802
Query 1801 AGAAAGGTTTTGGGACTTTGTCTCTCTGCTGCTTCAAACCGTCCGTTAGAAGATACTCGA 1860
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1803 AGAAAGGTTTTGGGACTTTGTCTCTCTGCTGCTTTAAACCGTCCTTTAGAAGATACTCGA 1862
Query 1861 TTTGGTGTCTTTAGAATGTAA 1881
|||||||||||||||||||||
Sbjct 1863 TTTGGTGTCTTTAGAATGTAA 1883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93122010975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5