BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328350
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33945.1 | Symbols: | ARM repeat superfamily protein | chr4... 2010 0.0
AT4G33940.1 | Symbols: | RING/U-box superfamily protein | chr4... 712 0.0
> AT4G33945.1 | Symbols: | ARM repeat superfamily protein | chr4:16268050-16270743
FORWARD LENGTH=1693
Length=1693
Score = 2010 bits (1088), Expect = 0.0
Identities = 1206/1264 (95%), Gaps = 4/1264 (0%)
Strand=Plus/Plus
Query 791 TTGGGATCATTACTTGTGTTCCAGGAGAAAGTAGCATTAAGGACAATCCGGTTATTGCTT 850
||||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct 203 TTGGGATCATTACATGTGTTCCTGGAGAAAGTAGCGTTAAGGACAATCCGGTGATTGCTT 262
Query 851 GCTTAGATAGACTTAAAGAATTCGATAGTGTTTCTATTGACGGACCTCTTCGAGATGAGG 910
| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 263 GTTTAGATAGACTAAAAGAATTCGACAGTGTTTCAATAGACGGACCTCTTCGAGATGAGG 322
Query 911 ATTTCGATGAGATATCTAGTCTGTTCAACAATCTCAATGAGCTTTGTAGCAGCCAAGAAT 970
||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 323 TTTTCGATGAGATATCGAGTTTGTTCAAGAATCTCAATGAGCTTTGTAGCAGCCAAGAAT 382
Query 971 CAGGGAACGCAGCTATTGCGATAAAACACGGTGCTGTGGATTTAACTTGCTCGATTTGTT 1030
|||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 383 CAGGGAACGCTGCAATTGCGACAAAACATGGTGCTGTGGATTTAACTTGCTCGATTTGTT 442
Query 1031 CCAAAATCAAGACATCTACTAGAAGTAATCGCGTTGTTGTTCCTTG-TTTCAAGGCTTTG 1089
|||||||||||| |||||||||||||||||| ||| |||||||||| ||| |||||||||
Sbjct 443 CCAAAATCAAGATATCTACTAGAAGTAATCGTGTTCTTGTTCCTTGCTTT-AAGGCTTTG 501
Query 1090 GCTGTGTTGATCCGTGACATTCAGAGCACAGAGATG-TTCAGGAATTGTACCGGACCAAA 1148
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 502 GCTGTGTTGATCCGTGACATTCAGAGCACAGAGA-GATTCAGGAATTGTACTGGACCAAA 560
Query 1149 TATCGTTGTTGATCTCTTACGTGGTTCCAGCTCCGATTCTGATTTGTTAGATGCTGGTTT 1208
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 561 TATCGTTGTTGATCTCTTAAATGATTCCAGCTCCGATTCTGATTTGTTAGATGCTGGTTT 620
Query 1209 TGCGGTTGTTGCTGCTGCAGCAACTGGTAATGAAGTCGTCAAGCAGTTATTCATGGAACT 1268
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 621 TGCGGTTGTTGCTGCTGCAGCAACTGGTAATGAAGTTGTGAAACAGTTATTCATGGAACT 680
Query 1269 GAAAATCGATGAATTTATTCTGCAAGTGCTCAGTAGAGAGAGTAAAACTACCATTAGAGC 1328
||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 681 GAAAATCGATGAACTTATTCTGCAAGTGTTGAATAGAGAGAGTAAAACTACCATTAGAGC 740
Query 1329 TCTGTACGATGCTATTTGTGCTCTTTTGACTCCAGATGACTACCGTGTTGTTGCTTCCCA 1388
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 741 TCTGTACGATGCTATTTGTGCTCTTTTGACTCCAGATGACTTCCGTGTTGTTGCTTCCCA 800
Query 1389 AGTTTATGGTTATGCACGAACTTTCGCCAAATTAGGGATTGCAACAGCCCTCACTGAAGC 1448
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 801 AGTTTATGGTTATGCACGAACTTTTGCCAAATTAGGGATTGCGACAGCCCTCACTGAAGC 860
Query 1449 ATTACAGGCAGGAATTGGCTCTGATAGCTTGGTGTCAGCAAGTACTGCGTTAAAAGCAAT 1508
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 861 ATTACAGGCAGGGATTGGCTCTGATAGTTTGGTGTCAGCAAGTACTGCGTTAAAAGCAAT 920
Query 1509 TGCTGTAAATGATGAAATATGTAAATCTATTGCCGAAACTGGTGGAATAGATACACTTCT 1568
|||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 921 TGCTGTCAATGATGAAATATGTAAATCTATTGCTGAATCCGGTGGAATAGATACACTTCT 980
Query 1569 TCGGTGTATTGATGATAGCGGTGAGCAAGGCAACAAAACTGCTGCTAAGACATGTTGTTC 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TCGGTGTATTGATGATAGCGGTGAGCAAGGCAACAAAACTGCTGCTAAGACATGTTGTTC 1040
Query 1629 CCTGTTGTCTAAGTTGGCAGGAAGTGACTCTAACAAGAGTACCATAGTTGAGAAGCGAGG 1688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1041 CCTGTTGTCTAAGTTGGCAGGAAGTGACTCTAACAAGAGTACCATAGTTGAGAAGCAAGG 1100
Query 1689 TCTTGACAAGCTAATCACACTCGCACAACGATTCTCTGACGATCCTCTAGTCATACAAGA 1748
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1101 TCTGGACAAGCTAATCACACTCGCACTACGATTCTCTGATGATCCTCTAGTCATACAAGA 1160
Query 1749 GGTCATGTTGATAATCTCTATAATCTGTTTGAGATCACCAGACCACGCTGCCAAGGCTAT 1808
||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1161 GGTGATGTTGATAATCTCTATAATCTGTCTGAGATCACCAGACCACGCAGCCAAGGCTAT 1220
Query 1809 AGAAGCTGGAGCTGGTGATCTAGCAGTCCAAGCTATGAAGAGGTTCCCAGTAGCTGCTCA 1868
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1221 AGAAGCTGGAGCTGGTGATCTAGCGGTCCAAGCAATGAAGAGGTTCCCAGTAGCTGCTCA 1280
Query 1869 AATGCAGAGAAACGCTTGCAACATGATACGGAACATTGCTGTAAGAAATGCAGAGAACAG 1928
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1281 AATGCAGAGAAACGCTTGCAACATGATACGGAACATTGCTGTCAGAAGTGCAGAGAACAG 1340
Query 1929 AACTATTCTGCTTGCTAATGGAATTGAGAAGCTGATAAGGACTGCTAAGGCCAACAATGA 1988
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1341 AACTATTCTGCTTGCTAATGGAATCGAGAAGCTGATAAGAACTGCTAAAGCCAACAATGA 1400
Query 1989 GACATGCAGAGCCGCTGCAACTGATGCACTGAGAGACCTTGGCCTTGATAACTACAATAA 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GACATGCAGAGCCGCTGCAACTGATGCACTGAGAGACCTTGGCCTTGATAACTACAATAA 1460
Query 2049 CTAA 2052
||||
Sbjct 1461 CTAA 1464
Score = 191 bits (103), Expect = 3e-47
Identities = 114/119 (96%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 677 TTGAAAACCAT-TTTTCCGATCTATCAAATCGGAGCGGCGGAGGAAGGAGAATGGGTGTC 735
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 19 TTGAAAACCATCTTTTCCGATCTATCGAATCGGAGCGGCGAAGGAAGGAGAATGGGTGTC 78
Query 736 CGTGCAATATCTCAGGAGGCATTCGACGATCTCGTTAGGGAAAATGTTGAAGATCTTGG 794
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 79 CGTACAATATCTCAGGAGGCATTCGACGATCTGGTTAGGGAAAATGTTGAAGATCTTGG 137
> AT4G33940.1 | Symbols: | RING/U-box superfamily protein | chr4:16266023-16267786
FORWARD LENGTH=1025
Length=1025
Score = 712 bits (385), Expect = 0.0
Identities = 453/485 (93%), Gaps = 8/485 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCCTTAGGGAGCAGC-AA--CCTGAGAGAGGAGATGGAGGTAACAACAACCGCC 57
||||||||||| ||||||||| || |||||| || ||||||||||| ||||||||||
Sbjct 63 ATGTCTTCCTTGGGGAGCAGCAAATCCCTGAGGGATGAGATGGAGGT---AACAACCGCC 119
Query 58 GATGTATTGCCGGAGGTTAACGCCGTCACGGAGACGGAAAATCTTGATCGGAACGAGCTT 117
||||| || |||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 120 GATGTTTTTCCGGAGGTTAACGCCGCCGCTGTGACGGAAAATCTTGATCGGAACGAGCTT 179
Query 118 GTGCTTGCTGACGGAGTCGTGACGGTTGAGGAAAGGAATATTGAAG-CTGACAATCGTGG 176
||||||||||||||||||||| ||| ||||||||||||||||| || | |||||||||||
Sbjct 180 GTGCTTGCTGACGGAGTCGTGTCGGCTGAGGAAAGGAATATTG-AGCCAGACAATCGTGG 238
Query 177 AGAGAGGCAGACAGAGAGCGAGACTCCTCCAGAGGATGATGTTTGCCCGATCTGTTTCGG 236
||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 239 AGAGAGGAAGATAGAGAGCGAGTCGCCTCCAGAGGATGATGTTTGCCCGATCTGTTTCGG 298
Query 237 TTCCTTTACGGTTCCGTGTCGTGGAAATTGTGGTCATTGGTATTGCGGAAATTGCATCTT 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTCCTTTACGGTTCCGTGTCGTGGAAATTGTGGTCATTGGTATTGCGGAAATTGCATCTT 358
Query 297 GCAGTACTGGAACTATGCTGCAATATCCAGGCCTTGCAAGTGTCCCATGTGTGTTCGGCA 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 359 GCAGTACTGGAACTATGCTGCAATATCTAGGCCTTGCAAGTGTCCCATGTGTGTTAGGCA 418
Query 357 CATCACTAAGCTGTCACCAGAAGCATCATTGCAAGAGCGCCAGGAGCAAGAGGTGAAGGA 416
|||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 419 CATCACGAAGCTGTCACCAGAACCATCTTTGCAAGAGCGTCAGGAGCAAGAGGTGAAGGA 478
Query 417 GGTTCTTGATAAGGTCCGTAGGTATAACCGTCTCTTTGTTGGAGGTCTAACTGGCTTTGT 476
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTTCTTGATAAAGTCCGTAGGTATAACCGTCTCTTTGTTGGAGGTCTAACTGGCTTTGT 538
Query 477 TCAGA 481
|||||
Sbjct 539 TCAGA 543
Score = 255 bits (138), Expect = 9e-67
Identities = 148/153 (97%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 481 ATGTTCGTGAGTACCCTTTACACTGCCGCAGAGTTTAACTTCATCCCAACGGGCGGGTTC 540
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 642 ATGTTCATGAGTACCCTTTACACTGCCGCAGAGTTTAACTTCATTCCAACGGGCGGGTTC 701
Query 541 AGAATAGTGACAGTTTTTGACTACGCTGCGATTGCTATGATCCTGATTCTACGCATAGTA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 702 AGAATAGTGACAGTTTTTGACTACGCTGCGATTGCTATGATCCTGATTCTACGCTTAGTA 761
Query 601 GGGATATATCGGAGGAGACGTCTTGCTCAGCAG 633
|||||||||||||||||||| || |||||||||
Sbjct 762 GGGATATATCGGAGGAGACGCCTAGCTCAGCAG 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101706304170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5