BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328381
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33565.1 | Symbols: | RING/U-box superfamily protein | chr4... 1315 0.0
> AT4G33565.1 | Symbols: | RING/U-box superfamily protein | chr4:16136749-16138201
FORWARD LENGTH=1453
Length=1453
Score = 1315 bits (712), Expect = 0.0
Identities = 875/953 (92%), Gaps = 13/953 (1%)
Strand=Plus/Plus
Query 1 ATGAGATTCCTTCACAGATTTCTGTTGGAGGATGTGTCCAACGAAACCTTATCGGACTCG 60
||||| ||||||||||||||||||||||||||| || |||| |||||||| ||||||||
Sbjct 232 ATGAGGTTCCTTCACAGATTTCTGTTGGAGGATATGCCCAAAGAAACCTTTTCGGACTCT 291
Query 61 ATCTGTAAATTTAATTGCCTCCAAGAGTTGAAAAGTAAAGGATATTGTCCATCCTATTGT 120
|||||||| ||||||| ||||||||||||||| | |||||| ||| |||||||||||
Sbjct 292 CTCTGTAAAAATAATTGCATCCAAGAGTTGAAAACTCTAGGATACTGTTCATCCTATTGT 351
Query 121 CTTGACGAGTGTCCATCAATCTGCGAGATCGTCGTAGTTACAGGT-TTTACTCCACCTCC 179
|||||||||||||| || |||||||||||||||||| || ||||| ||| | |||||| |
Sbjct 352 CTTGACGAGTGTCCTTCCATCTGCGAGATCGTCGTAATTTCAGGTCTTT-CACCACCTGC 410
Query 180 AGTGATCCACCACGACGACAACTTAAAGAGGATCTTGATCATCTCTGCTTCATCTATCAT 239
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AGAGATCCACCACGACGATAACTTAAAGAGGATCTTGATCATCTCTGCTTCATCTATCAT 470
Query 240 CACAACTCTGTTTCTCCTTACTTTACTTGTTCTCTGCTTCAAGTTTTACTATAGGAGGAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CACAACTCTGTTTCTCCTTACTTTACTTGTTCTCTGCTTCAAGTTTTACTATAGGAGGAG 530
Query 300 AAGATTAGAATTAGCAATATCAAGAAGATGGAGCATGGAAGAAGCTAGGAATTGGGACTT 359
||||| | | | | ||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 531 AAGATCA-A-TAA-CAACATCAAGAAGATGGAGTATGGAAGAAGCTAGGAATTGGGATTT 587
Query 360 GGATGGACCAGCACCGGTTATCGTCGATCATCCGATTTGGCATATCAGAACCATAGGATT 419
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 588 TGATGGACCAGCACCTGTTATTGTTGATCATCCGATTTGGCATATCAGAACCATAGGGTT 647
Query 420 GAATCCAACGGTTATAAGTTCGATCAAAGTTTGCCAGTATAGTAAAAAAGATGGTGTTGT 479
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 648 GAATCCAACGGTTATAAGTTCCATCAAAGTTTGTCAGTATAGTAAAAAAGATGGTGTTGT 707
Query 480 GGAAGGAACTGATTGTTCGGTTTGTTTAAGCGAATTCGAAGAAGAAGAGACGCTTAGATT 539
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GGAAGGAACTGATTGCTCCGTTTGTTTAAGCGAATTCGAAGAAGAAGAGACGCTTAGATT 767
Query 540 GTTACCAAAGTGTAAACACGCTTTTCATCTTTCTTGTATTGATACTTGGCTTAGATCACA 599
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 768 GTTACCAAAGTGTAAACATGCTTTTCATCTTTATTGTATTGATACTTGGCTTAGATCACA 827
Query 600 CACCAATTGTCCGCTTTGTCGTGCTCCTATAGTCGTGGCCAACACGATGATTGATGACCA 659
|||||||||||||||||||||||||||||| || | ||||||||| ||||||||||| ||
Sbjct 828 CACCAATTGTCCGCTTTGTCGTGCTCCTATCGTTGAGGCCAACACAATGATTGATGATCA 887
Query 660 TAGTGAGGGTCTAGATGAGATCCGTGTGA-GTATTCCAGAAGAAATCGATGGAGATAATA 718
||||||||| ||||| ||||| |||||| | ||||||||||||| |||||||| |||
Sbjct 888 TAGTGAGGGGCTAGAGGAGATAAGTGTGATG-ATTCCAGAAGAAA---ATGGAGATGATA 943
Query 719 TCGATGAAGAAATCGAGGAAGAAAGAGATGGGTTTGCTAGTAATATTAGTAGGGAACATG 778
|||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||
Sbjct 944 CCGATGAAGAAATCGAGGAAGAAAGAGATGGCTTTGTTAGTAATATTAGTAGAGATCATG 1003
Query 779 GTGAGTCGCAGCA---GCGAGTGAGACGATCAGTGTCGTTGGGCTCGTCATCAGGATTAA 835
||||||| || || |||||||||||||||||||||||||| |||| ||| || ||||
Sbjct 1004 GTGAGTCACAACAACAGCGAGTGAGACGATCAGTGTCGTTGGATTCGTTATCGGGTTTAA 1063
Query 836 GGGCAAGTGAAGTTGTTGTGGGTAGAGAAAAGGAGAAGTTGAAGAGAGGCAATAACATTG 895
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1064 GGGTAAGTGAAGTTGTTGTGGGTAGAGAAAAGGAGAAGTTGAAGAGAGGCAATAATATTG 1123
Query 896 GATCTGGGTGGTCAAGTTTCTTGAAGAGATCTATCTCTTACAGTGGAAAGTAG 948
|||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 GATCTGGGAGGTCAAGTTTATTGAAGAGATCTATCTCTTACAGTGGAAAGTAG 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5