BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328389
Length=3213
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33495.1 | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydro... 1796 0.0
AT4G33500.1 | Symbols: | Protein phosphatase 2C family protein... 1646 0.0
> AT4G33495.1 | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydrolase
family protein | chr4:16110712-16112597 REVERSE LENGTH=1786
Length=1786
Score = 1796 bits (972), Expect = 0.0
Identities = 1056/1098 (96%), Gaps = 0/1098 (0%)
Strand=Plus/Plus
Query 2116 GATCGAGTTCGTGACCATGGCTACGACAACTACATGGAAGTCGAGAAGAAAATCCGTAAA 2175
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct 152 GATCGAGTTCGTGACCATGGCTACGACAATTACATGGAAGTGGAGAAAAAAATCCGCAAA 211
Query 2176 GTCATCAAATTTCACAGCTTGATTCTCTCTCAACCCAACAACACAATCGCAATCTCTCTT 2235
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 212 GTCGTCAAATTTCACAGCTTGATTCTCTCTCAACCCAACCACACAATCGCAATCTCTCTT 271
Query 2236 CTAGACACGCTCGCTCGTCGTCTAGGTCTCGGCTTCAAGCAACACGAACCAGGTGCTTTC 2295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CTAGACACGCTCGCTCGTCGTCTAGGTCTCGGCTTCAAGCAACACGAACCAGGTGCTTTT 331
Query 2296 CTCCTCAAATTCCCACACGTATTCGAGATTTACGAGCACCCAGTTCAAAGAATCCTCTAC 2355
|||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 332 CTCCTCAAGTTCCCACACGTGTTTGAGATATACGAGCACCCAGTTCAAAGAATCCTCTAT 391
Query 2356 TGTCGATTAACCCGTAAAGCTTTGGATCAAATCCGTCACGAGCACGAAGCTGTTCTCGCC 2415
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 392 TGTCGATTAACCCGTAAAGCTTTGGATCAAATCCGTCACGAACACGAAGCTGTTCTCGAC 451
Query 2416 CAAATACCCGACGCCGTGACCCGGTTGCGGAAACTCGTTATGATGTCGAATACGGGTCGG 2475
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 452 CAAATACCCGACGCCGTGACCCGGTTGAGGAAACTCGTTATGATGTCGAATACGGGTCGG 511
Query 2476 ATTCGTCTTGAACATGTCAGGATTGCTCGGACTGAGTTTGGACTCCCTGAAGATTTCGAG 2535
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 ATCCGTCTTGAACATGTCAGGATTGCTCGGACTGAGTTTGGACTCCCTGAAGATTTCGAG 571
Query 2536 TACTCTGTGATTCTGAAACATCCTCAGTTCTTTAGGCTCATTGATGCTGAAGAGACTCGA 2595
||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 572 TACTCTGTGATTCTGAAACATCCACAGTTCTTTAGACTCATTGATGGTGAAGAGACTCGA 631
Query 2596 GATAAGTACATTGAGATTGTGGAAAAGGATCCTAATTTATCGATTTGTGCAATAGAGAGA 2655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GATAAGTACATTGAGATTGTGGAAAAGGATCCTAATTTATCGATTTGTGCAATAGAGAGA 691
Query 2656 GTTAGAGAGATTGAGTATAGAACAAAGGGAATTGATGCAGAGGATGTTCGATTCTCATTC 2715
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 692 GTTAGAGAGATTGAGTATAGAACAAAAGGAATTGATGCAGAGGATGTTCGATTCTCATTC 751
Query 2716 GTTGTGAATTTTCCTCCTGGATTTAAGATTGGAAAGTATTTTCGAATTGCTGTTTGGAAA 2775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GTTGTGAATTTTCCTCCTGGATTTAAGATTGGAAAGTATTTTCGAATTGCTGTTTGGAAA 811
Query 2776 TGGCAGAGGCTTCCTTATTGGTCACCCTATGAGGATATTTCGGGTTACGATTTGAGATCG 2835
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 812 TGGCAGAGGCTTCCTTATTGGTCACCGTATGAGGATATATCGGGTTACGATTTGAGATCG 871
Query 2836 ATGGAAGCCCAGAATAGATTAGAGAAGAGAGCTGTTGCTTGTATCCATGAATTGCTTTCG 2895
|||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 872 ATGGAAGCGCAGAATCGATTAGAGAAGAGATCTGTTGCTTGTATTCATGAATTGCTGTCT 931
Query 2896 TTGACTGTGGAGAAGAAGATCACTCTTGAGAGAATTGCTCATTTTAGGAATGTTATGAAT 2955
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 932 TTGACTGTGGAGAAGAAGATCACGCTTGAGAGAATTGCTCATTTTAGGAATGTGATGAAT 991
Query 2956 TTGCCTAAGAAGTTGAAAGAGTTTCTTCTGCAACATCAAGGGATATTTTACATATCGACT 3015
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 992 TTGCCTAAGAAATTGAAAGAGTTTCTTTTGCAACATCAGGGGATATTTTACATATCGACT 1051
Query 3016 CGTGGGAATTACGGGAAGCTTCATACGGTGTTTCTTAGAGAGGCGTATAAGAGAGGGGAA 3075
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1052 CGAGGAAATTACGGGAAGCTTCATACGGTGTTTCTTAGAGAGGGGTATAAGAGAGGGGAA 1111
Query 3076 TTGGTTGAACCAAATGATGTGTATTTAGCTAGGAGGAGATTAGCTGAGCTTGTGTTGATG 3135
||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1112 TTGGTAGAACCGAATGATGTTTATTTAGCTAGGAGGAGATTAGCTGAGCTTGTTTTGATG 1171
Query 3136 AGTCCTAGAAAGGCTAAGGTTGATGCAGAGTTGGTTAGCTACAGAAATGGATTGGATGAT 3195
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1172 AGTCCTAGAAAGGCTAAGGTTGATGCAGAGTTGGTTCGCTACAGAGATGGATTGGATGAT 1231
Query 3196 GAAGATGATGTCGAATGA 3213
||||||||||||||||||
Sbjct 1232 GAAGATGATGTCGAATGA 1249
> AT4G33500.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:16112658-16116348 REVERSE LENGTH=2457
Length=2457
Score = 1646 bits (891), Expect = 0.0
Identities = 1292/1470 (88%), Gaps = 90/1470 (6%)
Strand=Plus/Plus
Query 1 ATGGCCGATCATATAG-TTCTTTCTCTCCAAGCTCCTCGC-TTTCTGATATTCCCTTGTT 58
|||||||||||| | | |||||||||| |||||||||| | ||||| || ||||||||||
Sbjct 106 ATGGCCGATCAT-TTGATTCTTTCTCTTCAAGCTCCTC-CTTTTCTCATCTTCCCTTGTT 163
Query 59 CTCTTCACCGTTCATGGAGATTTCCC----G-----GATATTCCGTTCCCGAGTTCCGAT 109
|||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 164 CTCTTCACCGTTCATGGAGATTTCCCGGTGGAATCAGATATTCCGTTCCTGAGTTCCGAT 223
Query 110 TCTCCTCTCAACTACAGTTGGCTAATTCCATTTCACCTTCAAAGTCTCCAGCTTCCTCTT 169
| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 224 TGTCCTCTCAGCTACAGTTGGCTAATTCCATTTCACCTTCAAAGTCTTCAGCTTCCTCTT 283
Query 170 CTTCTCCATGTCCTCCGGAGAATTCTGCTCCAGAGCAGTTCGATCTCGTGTCCAGCACTC 229
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 284 CTTCTCCA------CCGGAGAATTCTGCTCCAGAGAAGTTCGATCTCGTGTCCAGCACTC 337
Query 230 AGCTTAAGGATGGAAGTCATGTCTTCCGGTTCGGGGATGCAAGTGAAATTGAGAAATATC 289
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 338 AGCTTAAAGATGGAAGTCATGTCTTTCGGTTCGGGGATGCAAGTGAGATTGAGAAATATC 397
Query 290 TCGAGGCTCAAGAAAAAGCGAGATGCGTTGAGTTAGAAAAGCAAAATGCTAAGATTGCAG 349
|||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||| |
Sbjct 398 TCGAGGCTGAAGAAAAAGCGAGATGTGTTGAGGTAGAAACGCAAAATGCTAAGATTGCTG 457
Query 350 AAGAAGCAAGTGAACTTTCAAGGAAACAAGGGAAGAAATTGGTCAGTTCTAATATTGAAA 409
||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 458 AAGAAGCCAGTGAAGTTTCAAGGAAACAA---AAGAAATTGGTCAGTTCTATTATTGAAA 514
Query 410 TAAGTTCTGAGAAAGAGGAAACA---GCTCCTTCCAATCTTAGTAATGTCA-T----CAA 461
|||| ||||||||||||||||| ||||||||| ||||||| ||||||| | ||
Sbjct 515 CAAGTACTGAGAAAGAGGAAACAGCTGCTCCTTCCGATCTTAGCAATGTCATTAAAATAA 574
Query 462 A--AT--TAAAAGAGTTCGTTCTCCTACTAAGAAGAAGAAAGAAACTGTGTATGTATCAC 517
| || |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 575 AGGATCGTAAAAGGGTTCGTTCTCCTACTAAGAAGAAGAAAGAAACTGTGAATGTATCAC 634
Query 518 AGAGTGAAGATAAAGTTGATGCCAAGATTGCTAGTGTTTCCAATCTGAGCTCCATAGTTA 577
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 635 GGAGCGAAGATAAAATTGATGCCAAGAGTGCTAGTGTTTCCAATCTGAGCTCCATAGTTA 694
Query 578 GTGTAGCAGAAGCTACTCCAACTAGCTCTACTGAAGAAGAAGAAGAAGTTGTTGTTTCTG 637
||||||||||||||| ||||| |||||||||| ||||||||| | || | |
Sbjct 695 GTGTAGCAGAAGCTATTCCAATTAGCTCTACT------GAAGAAGAA---GCTG--T-T- 741
Query 638 AGCCAATCAATGAGAAGGAAATCACGGCTAAGTCATATAATGTAGAGCCTCTTTCTTCTC 697
| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 -G----T---TGAGAAGGAAATCACGGCTAAGTCATATAATGTAGAGCCTCTTTCTTCTG 793
Query 698 AAGTCATGGAGAAAGTTTCTGTCAATAAAATAGGAGACCGTGAGACAAATGGTTATCAAC 757
||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 794 AAGCCATGAAGAAAGTTTCTGTCAATAAAATAGGAGACTGTGAGACAAATGGTTAT---C 850
Query 758 GAATCACTGAGAATCGTATGGAGGTTCAAGCAATACCGTCATCATCTTCCGCACAACAGG 817
| | |||||||||||||||||||| |||| |||||||| | || |||||||||
Sbjct 851 --A--A--GAGAATCGTATGGAGGTTCAGGCAAGACCGTCAT--T-GTCTACACAACAGG 901
Query 818 AAGTTGTGCCTGTATCCACCATTGAAATTGACGAGAATTTGAATGTGAGGGAAAAGCCTG 877
|| || |||||||||||||||||||||||| || |||||| |||||| |||||||||
Sbjct 902 AAATTACGCCTGTATCCACCATTGAAATTGATGACAATTTGGATGTGACGGAAAAGCC-- 959
Query 878 TGAAAAATATTGAAGCTGAGGAGAATCTTGTCGTGGAACCAACAGCTACAGCTGCTGTGT 937
|||||||||||||||||||||||||| ||||||||||||||||| || | |||
Sbjct 960 -------TATTGAAGCTGAGGAGAATCTTGTCGCGGAACCAACAGCTACAGATGATTTGT 1012
Query 938 TTCCTGATGAACTCGTTTCAACTTCAGAAGCAACAGATCGCAGCGTTGATGAGATTGCTC 997
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1013 CTCCTGATGAACTCCTTTCAACTTCAGAAGCAACACATCGCAGCGTTGATGAGATTGCTC 1072
Query 998 AAAAACCTGTAATTGATACGTCTGAGGAAAACCTTATGAAAACTTTTGAAGCTGAGAAGA 1057
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 1073 AAAAACCTGTAATTGATACGTCTGAGGAAAACCTTCTGAACACTTTTGAAGCTGAGGAGA 1132
Query 1058 ATCTTGTAGTTGAACCAACAGCTACAGCGGCTGTGTCTTCTGATGAACTCATTTCAACTT 1117
||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1133 ATCCTGTAGTTGAACCAACAGCTACAGCTGCTGTCTCTTCTGATGAACTCATTTCAACTT 1192
Query 1118 CAGAAGCAACACACCACAGCGTTGATGAGATCTCTCAAAAGCCTGTTATTGATACGTCTG 1177
|||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1193 CAGAAGCAACACGTCACAGCGTTGATGAGATCGCTCAAAAGCCTATTATTGATACGTCTG 1252
Query 1178 AGGAAAACCCTATGAAAACTCCTGTTGAACCAGAAGCAACACATTGCAGCATTGACGAGA 1237
|| ||||||||||| ||||| |||||||||||||||| ||| | ||| |||||||||
Sbjct 1253 AGAAAAACCCTATGGAAACTTTTGTTGAACCAGAAGCAGTGCATAGTAGCGTTGACGAGA 1312
Query 1238 TCACTGAAAAGCCTGTAGTTGATACGTCTGATGTGGAAAATGATGGAGAAAATGTGGCTT 1297
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1313 GCACTGAAAAGCTTGTAGTTGTTACGTCTGATGTGGAAAATGATGGAGAAAATGTAGCTT 1372
Query 1298 CAACCATAGAAGATGAAATAACTGTGAGGGA-----TGA-T-A-A-TGGTAGCATATCTA 1348
|||||| |||||||||||||||||||||||| | | | | | |||||||||||| |
Sbjct 1373 CAACCACAGAAGATGAAATAACTGTGAGGGACACAATAACTGATAGTGGTAGCATATCCA 1432
Query 1349 A-AACTGCCGATGACACAAAAGGGGAAGATCTCCAACTTCCTGTACCTGAAACGGCCAGT 1407
| || || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1433 ATAA-TG---ATGACACAAAAGTGGAAGATCTCCAACTTCCTGTACCTGAAACGGCCAGT 1488
Query 1408 CTTGAACCCATTGAAGTGGCTTCTGACAGG 1437
|||||||||||| ||| |||||||| ||||
Sbjct 1489 CTTGAACCCATTAAAGCGGCTTCTGGCAGG 1518
Score = 1005 bits (544), Expect = 0.0
Identities = 634/678 (94%), Gaps = 4/678 (1%)
Strand=Plus/Plus
Query 1441 GCATTGGCAGGTCGTGAAGATGCTTATTTTATCTCTCACCACAATTGGATAGGTATTGCG 1500
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 GCATTGGCAGGTCGGGAAGATGCTTATTTTATCTCTCACCACAATTGGATAGGTATTGCT 1644
Query 1501 GATGGAGTCTCTGAGTGGTCATTTGAAGGAATCAATAAGGGAATGTATGCTCAAGAACTC 1560
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GATGGAGTCTCTCAGTGGTCATTTGAAGGAATCAATAAGGGAATGTATGCTCAAGAACTC 1704
Query 1561 ATGAGCAACTGTGAAAAGATTATTTCCGATGAAGCTGATAAGATAAGTGACCCAGTTCAA 1620
||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct 1705 ATGAGCAACTGTGAAAAGATTATTTCCAATGAAACTGCTAAGATAAGTGACCCAGTTCAA 1764
Query 1621 GTTCTCCATAGAAGTGTCAATGAGACTAAGTCCTCTGGATCATCAACAGCCTTAATTGCT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 GTTCTCCATAGAAGTGTCAATGAGACTAAGTCCTCTGGATCATCAACAGCCTTAATTGCT 1824
Query 1681 CATCTTGACAATAATGAACTCCACATCGCCAATATCGGAGATTCAGGATTCATGGTTATT 1740
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 1825 CATCTTGACAATAATGAACTCCACATAGCCAATATTGGAGATTCGGGATTCATGGTCATT 1884
Query 1741 AGGGAGGGCACAGTATTTCAGAAATCGTCTCCAATGTTCCATCATTTTTGTTTTCCCTTA 1800
||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1885 AGGGATGGCACAGTATTGCAGAATTCGTCTCCAATGTTTCATCATTTTTGTTTTCCCTTG 1944
Query 1801 CATATTAGGCAAGGC-GATGATGTCCTAAAACATGCAGAGGTTTACCATGTGATTCTGGA 1859
||||||| ||||||| | |||||||||||||| |||||||||||||||||||| |||||
Sbjct 1945 CATATTACGCAAGGCTG-TGATGTCCTAAAACTTGCAGAGGTTTACCATGTGAACCTGGA 2003
Query 1860 GGAGGGCGATGTTGTCATCGCAGCAACTGATGGACTCTTTGACAATTTGTATGAGAAAGA 1919
|| ||||||||||||||||||||||||||||| |||||||| || || || || |||||
Sbjct 2004 AGAAGGCGATGTTGTCATCGCAGCAACTGATGGGCTCTTTGATAACTTATACGAAAAAGA 2063
Query 1920 AATAGTTTCAATAGTTTGCAGGTCACTGGAACAGAGTTTGGAACCTCAGAATATAGCAGA 1979
||| ||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||
Sbjct 2064 AATCGTTTCAATAGTTTGCGGGTCACTGAAACAGAGTCTGGAACCTCAGAAAATAGCAGA 2123
Query 1980 GTTGGTAGCTG-AAAAGGCACAAGAAGTGGGACGATCTGAGACAGAGAGAACGCCATTTG 2038
||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2124 GTTGGTAGCTGCAAAAG-CACAAGAAGTAGGACGATCTAAGACAGAGAGAACGCCATTTG 2182
Query 2039 CAGACGCAGCTAAAGAAGAAGGATATGATGGACACAAAGGTGGTAAACTTGATGCTGTTA 2098
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2183 CTGACGCAGCTAAAGAAGAAGGATACAATGGACACAAAGGTGGTAAACTTGATGCTGTTA 2242
Query 2099 CTGTCATCGTTTCACTCG 2116
| |||||| ||||| |||
Sbjct 2243 CCGTCATCATTTCATTCG 2260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159831880398
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5