BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328390
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33490.2 | Symbols: | Eukaryotic aspartyl protease family p... 2167 0.0
> AT4G33490.2 | Symbols: | Eukaryotic aspartyl protease family
protein | chr4:16108643-16110877 REVERSE LENGTH=1614
Length=1614
Score = 2167 bits (1173), Expect = 0.0
Identities = 1244/1279 (97%), Gaps = 2/1279 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAATGAATGTTCGTTTTATGATTTTGTTGATGGTGATGTCTCTGGTTCTGGGT 60
||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 199 ATGGAGAAAATGAATGTCCGTTTTATGATTGTGTTGATGGTAATGTCTCTGGTTCTGGGT 258
Query 61 TTTTCGTCGGCTGTTGATTTCAGATGGAGGAAAACTGCAGGATTCTCAGATAGATTCACC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTTTCGTCGGCAGTTGATTTCAGATGGAGGAAAACTGCAGGATTCTCAGATAGATTCACC 318
Query 121 AGAGCTGTCTCTTCAGTCGTGTTCCCAGTTCATGGGAACGTTTATCCTCTTGGGTACTAT 180
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 319 AGAGCTGTTTCTTCAGTCGTGTTCCCAGTTCATGGCAACGTTTATCCTCTTGGGTACTAT 378
Query 181 AATGTTACCATCAACATAGGACAACCACCAAGACCTTATTATCTCGATCTTGATACTGGT 240
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 379 AATGTAACCATCAACATAGGACAACCACCAAGACCTTATTATCTTGATCTTGATACTGGT 438
Query 241 AGTGATCTCACTTGGCTCCAATGTGATGCTCCTTGTGTTCGTTGCTTGGAGGCGCCTCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 AGTGATCTCACTTGGCTCCAATGTGATGCTCCTTGTGTTCGTTGCTTGGAGGCGCCTCAT 498
Query 301 CCACTCTATCAGCCTAGTAGTGATCTAATTCCTTGCAATGATCCACTGTGTAAGGCTTTG 360
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 499 CCACTGTATCAGCCTAGTAGTGATCTTATTCCTTGCAATGATCCACTGTGTAAGGCTTTG 558
Query 361 CATCTGAATAGTAATCAGAGATGTGAGACTCCAGAGCAATGTGACTATGAGGTTGAGTAT 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CATTTGAATAGTAATCAGAGATGTGAGACTCCAGAGCAATGTGACTATGAGGTTGAGTAT 618
Query 421 GCTGATGGAGGATCTTCTCTCGGTGTTCTTGTTAGAGATGTCTTCTCTATGAACTATACA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GCTGATGGAGGATCTTCTCTCGGTGTTCTTGTTAGAGATGTCTTCTCTATGAACTATACA 678
Query 481 AAGGGTCTCCGGCTCACTCCCCGTCTTGCTCTAGGATGCGGATACGATCAAATCCCAGGG 540
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 679 CAGGGTCTCCGGCTCACTCCCCGTCTTGCTCTAGGTTGTGGATACGATCAAATCCCAGGG 738
Query 541 GCATCGAGTCATCATCCACTAGATGGAGTACT-GGGACTTGGTAGGGGGAAAGTAAGCAT 599
|| |||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||
Sbjct 739 GCTTCGAGTCATCATCCTCTAGATGGAGTATTAGGG-CTTGGTAGGGGGAAAGTAAGCAT 797
Query 600 TCTGTCACAGCTTCATAGCCAAGGTTATGTCAAGAATGTTATCGGTCATTGCCTAAGCAG 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 798 TCTGTCACAGCTTCATAGCCAAGGTTATGTAAAGAATGTTATCGGTCATTGCCTAAGCAG 857
Query 660 TTTAGGTGGAGGAATTCTCTTTTTTGGCGATGATCTTTATGATTCTTCAAGAGTCTCTTG 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 858 TTTAGGTGGAGGAATTCTCTTTTTTGGCGACGATCTTTATGATTCTTCAAGAGTCTCATG 917
Query 720 GACACCAATGTCGCGTGAATACTCAAAACACTACTCTCCTGCAATGGGAGGGGAACTTCT 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GACACCAATGTCTCGTGAATACTCAAAACACTACTCTCCTGCAATGGGAGGGGAACTTCT 977
Query 780 ATTCGGGGGAAGAACAACGGGATTGAAGAATCTATTAACAGTCTTTGACAGTGGAAGCTC 839
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 978 ATTCGGGGGAAGAACAACAGGATTGAAGAATCTATTAACAGTATTTGACAGTGGAAGTTC 1037
Query 840 TTACACATACTTCAATTCCAAGGCGTACCAAGCTGTAACATATTTGCTAAAGAGAGAACT 899
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1038 TTACACATACTTCAATTCCAAGGCATACCAAGCCGTAACATATTTGCTAAAGAGAGAACT 1097
Query 900 AAGCGGAAAACCGTTGAAAGAAGCACGGGATGATCACACGCTGCCTCTATGCTGGCAAGG 959
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1098 AAGCGGAAAACCGTTGAAAGAAGCACGGGATGACCACACGCTGCCTCTATGCTGGCAAGG 1157
Query 960 ACGTAGACCATTCATGAGCATTGAAGAAGTCAAGAAGTATTTCAAGCCTTTAGCTCTTAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1158 ACGTAGACCATTCATGAGCATTGAAGAAGTCAAGAAGTATTTCAAGCCTCTAGCTCTTAG 1217
Query 1020 CTTCAAAACAGGCTGGAGATCAAAAACTCTGTTTGAGATACCCCCAGAAGCTTATCTAAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CTTCAAAACAGGCTGGAGATCAAAAACTCTGTTTGAGATACCCCCAGAAGCTTATCTAAT 1277
Query 1080 CATTTCTATGAAGGGGAATGTATGTTTGGGAATCTTGAACGGCACAGAAATAGGTCTCCA 1139
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1278 CATTTCTATGAAGGGGAATGTATGTTTGGGAATCTTGAATGGCACAGAAATAGGTCTCCA 1337
Query 1140 GAACCTAAACCTCATCGGCGATATATCGATGCAAGATCAGATGATAATCTACGATAACGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GAACCTAAACCTCATCGGCGATATATCGATGCAAGATCAGATGATAATCTACGATAACGA 1397
Query 1200 GAAACAATCAATCGGATGGATGCCAGCGGATTGCGATGAACTTGCTTCACTAAAAGCTTC 1259
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1398 GAAACAATCAATCGGGTGGATGCCAGTGGATTGCGATGAACTTGCTTCACTAAAAGCAGC 1457
Query 1260 TCAAGTATATGAATACTGA 1278
|||||||||||||||||||
Sbjct 1458 TCAAGTATATGAATACTGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5