BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328395
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33440.1 | Symbols: | Pectin lyase-like superfamily protein... 2300 0.0
> AT4G33440.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:16091940-16094958 FORWARD LENGTH=1734
Length=1734
Score = 2300 bits (1245), Expect = 0.0
Identities = 1369/1430 (96%), Gaps = 4/1430 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCGGAGAAGAATCCCACCACAGTATTGAGCGCCATTACAAGACCTTCGTGGGCG 60
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 81 ATGGAACCGGAGAAGAATCCGACCACAGTATTGAGTGCCATTACAAGACCTTCGTGGGCG 140
Query 61 TTTCTTCTCCTTGTTTTCACTGCCTTAGCGATTCTCTCTCTCCAAATCTCTTCCAATTCT 120
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 141 TTTCTTCTCCTTGTTTTCACCGTCTTAGCGATTCTCTCTCTCCAAATCTCTTCCAATTCT 200
Query 121 TTTATCCCTATCTGGATCCCGACTTCTCAATATCACGACCCGGTTACCTGCTCCGGGTTT 180
||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 201 TTTCTCCCTCTCTGGATCCCGACTTCTCAATATGACGACCCTGTTACCTGCTCCGGGTTT 260
Query 181 TTCAACCATGACCCGTTCCCGAACCGGAAAGTCATGTCGATTACCGATTTCGGCGGCGTA 240
||||| || ||||||||||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 261 TTCAATCACGACCCGTTCCCTAACCGGATCGTTATGTCGATTACCGATTTCGGCGGTGTT 320
Query 241 GGAGACGGCAAA-ACGTCGAACACGGAGGCTTTCCGCCGCGCCGTACGGCACCTTGAAGG 299
|||||||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 321 GGAGACGG-AAAGACGTCGAACACGGCCGCTTTCCGCCGCGCCGTAAGGCACCTTGAAGG 379
Query 300 TTTTGCGGCCGAGGGTGGGGCCCAGCTCAATGTCCC-GATGGGCTCGTGGCTCTCTGGAA 358
||||||||| |||||||||||||||||||||||||| || |||| ||||||| |||||||
Sbjct 380 TTTTGCGGCGGAGGGTGGGGCCCAGCTCAATGTCCCGGA-GGGCACGTGGCTTTCTGGAA 438
Query 359 GCTTCAACCTCACCAGCAATTTCACGCTCTTTCTCCAACGCGGCGCTGTCATTTTGGGAT 418
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 439 GCTTCAACCTCACCAGCAATTTCACGCTCTTTCTCGAACGCGGCGCTCTCATTTTGGGAT 498
Query 419 CCAAGGACCTAGACGAATGGCCAATAGTAGAGCCATTGCCTTCTTATGGAAGAGGCAGAG 478
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 499 CCAAGGACCTAGACGAATGGCCGATAATAGAGCCATTGCCTTCTTATGGAAGAGGGAGAG 558
Query 479 AGAGACCTGGTGGTAGACACATTAGCCTCATTCATGGAGACAACCTCACTAATGTTGTCA 538
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 559 AGAGACCTGGTGGTAGACACATCAGCCTCATTCATGGAGACAATCTCACTAATGTTGTCA 618
Query 539 TTACAGGAGAAAATGGGACAATTGATGGACAGGGGAAAATGTGGTGGGAGCTATGGTGGA 598
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 619 TTACAGGAGAAAATGGGACAATTGATGGACAGGGGAAAATGTGGTGGGAGTTATGGTGGA 678
Query 599 ACAGAACATTGGTGCATACGAGAGGCCATCTTATTGAACTCAAGAACTCTCATAATATTC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 679 ACAGAACATTGGTGCATACGAGAGGCCATCTTATTGAACTCAAGAACTCTCATAATATCC 738
Query 659 TCATCTCTAACCTCACTTTGCTCAATTCTCCTTTCTGGACAATCCATCCTGTTTATTGCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCATCTCTAACCTCACTTTGCTCAATTCTCCTTTCTGGACAATCCATCCTGTTTATTGCA 798
Query 719 GTAATGTTGTTATTAGAAATATGACCATCCTTGCTCCGATGAATGCTCCTAACACCGATG 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 799 GTAATGTTGTTATTAGAAATATGACCATCCTTGCTCCGATGAATGCTCCTAACACCGACG 858
Query 779 GTATAGATCCAGACTCAAGCACCAATGTCTGCATTGAGGACTGTTACATTGAAAGCGGTG 838
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 859 GTATAGATCCAGACTCAAGCACCAATGTCTGCATTGAGGATTGTTACATCGAAAGTGGTG 918
Query 839 ATGACCTTGTAGCTGTGAAGAGCGGGTGGGACCAGTATGGAATGGCTGTGGCCCGTCCGA 898
|||| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 919 ATGATCTTGTAGCTGTAAAGAGCGGGTGGGATCAATATGGAATGGCTGTGGCACGTCCGA 978
Query 899 GTTCAAACATCGTAATCCGAAGGATCTCTGGTACTACTCGCACTTGTTCAGGAGTTGGAA 958
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 979 GTTCAAACATCGTAATCCGAAGAATCTCTGGTACTACTCGCACTTGTTCAGGAGTTGGGA 1038
Query 959 TAGGCAGTGAGATGTCTGGTGGGATTTTCAACATAACCGTCGAAGATATTCACGTCTGGG 1018
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1039 TAGGCAGTGAGATGTCTGGTGGGATTTTCAACATAACCGTTGAAGATATTCACGTCTGGG 1098
Query 1019 ATTCTGCGGCCGGGCTCCGCATAAAAACAGATAAAGGGAGAGGCGGGTACATTTCGAATA 1078
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1099 ATTCTGCGGCTGGGCTCCGCATAAAAACAGATAAAGGGAGAGGTGGGTACATTTCGAATA 1158
Query 1079 TCACCTTTAATAATGTGTTATTGGAGAAAGTGAAAGTTCCGATTAGATTCAGCAGTGGCT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TCACCTTTAATAATGTGTTATTGGAGAAAGTGAAAGTTCCGATTAGATTCAGCAGTGGCT 1218
Query 1139 CAAATGATCACTCGGACGACAAATGGGATCCGAAAGCTCTTCCGAGAGTAAAAGGGATTT 1198
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 CAAATGATCACTCAGACGATAAATGGGATCCGAAAGCTCTTCCGAGAGTAAAAGGGATTT 1278
Query 1199 ACATTAGCAATGTTGTGAGTCTGAATTCAAGAAAGGCCCCTATGTTGCTCGGTGTTGAAG 1258
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1279 ACATTAGCAATGTTGTGAGTCTGAATTCGAGAAAGGCCCCTATGTTGCTCGGTGTTGAAG 1338
Query 1259 GCACTTCGTTTCAAGACGTATGCTTAAGGAATGTTACGCTTCTTGGGTTACCGCAGACCG 1318
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1339 GCACATCGTTTCAAGACGTATGCTTGAGGAATGTTACGCTTCTTGGGTTACCGAAGACCG 1398
Query 1319 AGAAATGGAAATGCAAGGATGTTTCAGGGTACGCGAGTGATGTTTTTCCTCTGTCATGTC 1378
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1399 AGAAATGGAAATGCAAGGATGTTTCTGGTTACGCGAGTGACGTTTTTCCTCTGTCATGTC 1458
Query 1379 CACAGTTGTTGCAGAAGAAAGGTTCGATATCTCAGTGTTCATATAGATGA 1428
||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1459 CACAGTTGTTGCAGAAGAAAGGTTCAATAGCTCAGTGTTCATATAGATGA 1508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5