BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg328405 Length=1791 Score E Sequences producing significant alignments: (Bits) Value AT4G33330.2 | Symbols: PGSIP3, GUX2 | plant glycogenin-like sta... 2839 0.0 > AT4G33330.2 | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch initiation protein 3 | chr4:16059754-16063070 REVERSE LENGTH=1890 Length=1890 Score = 2839 bits (1537), Expect = 0.0 Identities = 1697/1775 (96%), Gaps = 8/1775 (0%) Strand=Plus/Plus Query 1 ATGACGATAATGACGATGATAATGAAGATGGCTCCATCCAAATCCGCACTGATACGCTTC 60 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 10 ATGACGATAATGACGATGATAATGAAGATGGCTCCTTCCAAATCTGCACTGATACGCTTT 69 Query 61 AATCTAGTCTTGTTGGGTTTCTCTTTTCTTCTCTACACTGCCGTTTTTC-TCCACCCTTC 119 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 70 AATCTAGTCTTGTTGGGTTTCTCTTTTCTTCTCTACACTGCC-ATTTTCTTCCACCCTTC 128 Query 120 TTCATCAGTATACTTCAGCAGTGGAGCTTCCTTTGTTGGATGCTCCTTTCGTGATTGCAC 179 ||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 129 TTCATCAGTCTATTTCAGCAGCGGAGCTTCCTTTGTTGGATGCTCTTTTCGTGATTGCAC 188 Query 180 ACCCAAGGTAGTGAGAGGAGTGAAGATGCAAGAACTCGTTGAAGAGAACGAAATAAACAA 239 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 TCCCAAGGTGGTGAGAGGAGTGAAGATGCAAGAACTCGTTGAAGAGAACGAAATAAACAA 248 Query 240 CAGAGATTTGCTAACCGCTAGTAACCAAACCAAGCTGGAGGCGCCAAGCTTCATGGAAGA 299 | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 249 GAAAGATTTGCTAACCGCTAGTAACCAGACAAAGCTGGAGGCGCCAAGCTTCATGGAAGA 308 Query 300 GATTTTAACAAGAGGGTTAGGGAAAACAAAGATAGGGATGGTGAACATGGAAGAATATGA 359 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 309 GATTTTAACAAGAGGGTTAGGAAAAACAAAGATAGGGATGGTGAACATGGAAGAATGTGA 368 Query 360 TCTTACTAATTGGAAACGTTATGGAGAAACGGTGCACATACATTTTGAGCGTGTCTCTAA 419 |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 369 TCTTACTAATTGGAAACGTTATGGCGAAACGGTTCACATACATTTTGAGCGTGTCTCGAA 428 Query 420 GCTGTTCAAATGGCAAGACTTGTTCCCCGAGTGGATAGATGAAGAGGAAGAAACCGAGGT 479 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 GCTCTTCAAATGGCAAGACTTGTTCCCCGAGTGGATAGATGAAGAGGAAGAAACCGAGGT 488 Query 480 TCCCACATGTCCTGAGATACCGATGCCAGATTTTGAAAGCGTT-GAGAAGTTGGATTTGG 538 ||||||||||||||||||||| ||||| ||||| |||||| || |||||||||||||||| Sbjct 489 TCCCACATGTCCTGAGATACCTATGCCCGATTTCGAAAGC-TTAGAGAAGTTGGATTTGG 547 Query 539 TAGTAGTGAAGTTGCCTTGTAATTATCCTGAAGAAGGGTGGAGAAGAGAGGTTTTGAGGT 598 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 548 TAGTAGTGAAGTTGCCTTGTAATTACCCTGAAGAAGGGTGGAGAAGAGAGGTTTTGAGGT 607 Query 599 TGCAAGTGAACCTAGTTGCGGCTAACTTGGCAGCCAAGAAAGGGAAGACGGATTGGAGAT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 TGCAAGTGAACCTAGTTGCGGCTAACTTGGCAGCCAAGAAAGGGAAGACGGATTGGAGAT 667 Query 659 GGAAGAGCAAAGTGTTATTTTGGAGCAAATGTCAACCGATGATTGAGATTTTCCGGTGTG 718 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 668 GGAAAAGCAAAGTGTTGTTTTGGAGCAAATGTCAACCGATGATTGAGATTTTCCGGTGTG 727 Query 719 ATGATTTGGAGAAGAGAGAGACAGATTGGTGGTTGTATCGCCCTGAGGTGGTTAGGTTAC 778 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 728 ATGATTTGGAGAAGAGAGAGGCAGATTGGTGGCTGTATCGCCCTGAGGTGGTTAGGTTAC 787 Query 779 AACAGAAG-CTTAGTTTGCCAATCGGATCTTGCAATCTTGCTCTTCCTTTGTGGGCACCA 837 ||||| || || ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 788 AACAG-AGACTCAGTTTGCCAGTCGGATCTTGCAATCTTGCTCTTCCTTTGTGGGCACCA 846 Query 838 CAAGGTGTAGACAAAGTGTATGACCTATCGAAGATAGAAGCAGAGACAAAACGACCAAAA 897 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 847 CAAGGTGTAGACAAAGTGTATGACCTAACGAAGATAGAAGCAGAGACAAAACGACCAAAA 906 Query 898 CGTGAAGCCTACGTAACAGTCCTCCATTCTTCCGAGTCTTATGTCTGTGGTGCCATAACT 957 ||||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct 907 CGTGAAGCCTACGTAACTGTTCTTCACTCTTCCGAGTCTTATGTCTGTGGTGCCATAACT 966 Query 958 TTGGCTCAAAGCCTTCTTCAGACAAACACCAAACGCGATCTTATCCTTCTCCACGATGAT 1017 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 TTGGCTCAAAGCCTCCTTCAGACAAACACCAAACGCGATCTTATCCTTCTCCACGATGAC 1026 Query 1018 TCCATCTCCATTACCAAACTTCGAGCTCTCGCGGCCGCAGGATGGAAGCTTCGTCGGATC 1077 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1027 TCCATCTCCATTACCAAACTTCGAGCTCTCGCCGCCGCAGGATGGAAGCTTCGTCGGATC 1086 Query 1078 ATCCGAATAAGAAACCCACTAGCCGAGAAGGACTCTTACAATGAATACAATTACAGCAAG 1137 || ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct 1087 ATTCGAATCAGAAACCCACTTGCGGAGAAGGACTCGTACAATGAATACAACTACAGCAAG 1146 Query 1138 TTTCGACTTTGGCAATTGACAGATTATGACAAAGTGATCTTCATTGATGCTGACATCATC 1197 |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1147 TTTCGACTCTGGCAATTGACAGATTACGACAAAGTGATCTTCATTGATGCCGACATCATC 1206 Query 1198 GTCCTACGTAACCTAGATCTTCTCTTCCATTTTCCTCAGATGTCAGCCACCGGAAATGAT 1257 ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1207 GTCTTACGTAACCTTGATCTTCTCTTCCATTTTCCTCAGATGTCGGCCACCGGAAATGAT 1266 Query 1258 GTCTGGATATTTAATTCAGGCATCATGGTCATCGAGCCTTCTAATTGTACGTTTAGTACG 1317 || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1267 GTATGGATATATAATTCAGGCATCATGGTCATCGAGCCTTCTAATTGTACGTTTACTACA 1326 Query 1318 ATCATGAGCCAGAGAAGCGAGATCGTTTCATACAACGGCGGAGATCAAGGGTACCTAAAC 1377 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1327 ATCATGAGCCAGCGAAGCGAGATCGTTTCATACAACGGTGGAGATCAAGGGTACCTAAAC 1386 Query 1378 GAGATATTTGTGTGGTGGCACCGATTGCCTCGACGAGTAAACTTTCTGAAGAACTTCTGG 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1387 GAGATATTTGTGTGGTGGCACCGATTGCCTCGACGAGTAAACTTTCTGAAGAACTTCTGG 1446 Query 1438 TCGAACACAACCAAAGAAAGAAACATGAAGAACAACCTCTTCGCTGCGGAGCCTGC-TCA 1496 |||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||| Sbjct 1447 TCGAACACAACCAAAGAAAGAAACATCAAGAACAACCTCTTCGCCGCGGAGCC-GCCTCA 1505 Query 1497 GGTCTACGCGGTCCACTACTTAGGTTGGAAACCATGGCTTTGCTATAGAGACTACGACTG 1556 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1506 GGTCTACGCGGTCCACTACTTAGGTTGGAAACCATGGCTTTGCTATAGGGACTACGATTG 1565 Query 1557 CAACTACGACGTGGATGAGCAATTAGTGTACGCTAGCGATGCGGCTCACGTTAGGTGGTG 1616 ||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 1566 CAACTACGACGTGGACGAGCAGTTGGTGTACGCTAGTGATGCGGCTCACGTTAGGTGGTG 1625 Query 1617 GAAAGTTCACGACTCCATGGACAAAGCTTTGCAAAAGTTTTGCAGGCTGACGAAGAAGAG 1676 |||||| ||||||||||||||| | || |||||||||||||||||||||||||| ||||| Sbjct 1626 GAAAGTGCACGACTCCATGGACGATGCATTGCAAAAGTTTTGCAGGCTGACGAAAAAGAG 1685 Query 1677 GAGAACGGAGATCAACTGGGAGAGGAGGAAAGCAAGGCTTAGAGGTTCCACTGATTACCA 1736 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1686 GAGAACGGAGATCAACTGGGAGAGGAGGAAAGCAAGGCTTAGAGGTTCCACTGATTATCA 1745 Query 1737 TTGGAAGATCAATGTCACTGATCCAAGACGACGTC 1771 ||||||||||||||||||||||||||||||||||| Sbjct 1746 TTGGAAGATCAATGTCACTGATCCAAGACGACGTC 1780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88603961925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5