BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328405
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33330.2 | Symbols: PGSIP3, GUX2 | plant glycogenin-like sta... 2839 0.0
> AT4G33330.2 | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch
initiation protein 3 | chr4:16059754-16063070 REVERSE
LENGTH=1890
Length=1890
Score = 2839 bits (1537), Expect = 0.0
Identities = 1697/1775 (96%), Gaps = 8/1775 (0%)
Strand=Plus/Plus
Query 1 ATGACGATAATGACGATGATAATGAAGATGGCTCCATCCAAATCCGCACTGATACGCTTC 60
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 10 ATGACGATAATGACGATGATAATGAAGATGGCTCCTTCCAAATCTGCACTGATACGCTTT 69
Query 61 AATCTAGTCTTGTTGGGTTTCTCTTTTCTTCTCTACACTGCCGTTTTTC-TCCACCCTTC 119
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 70 AATCTAGTCTTGTTGGGTTTCTCTTTTCTTCTCTACACTGCC-ATTTTCTTCCACCCTTC 128
Query 120 TTCATCAGTATACTTCAGCAGTGGAGCTTCCTTTGTTGGATGCTCCTTTCGTGATTGCAC 179
||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 129 TTCATCAGTCTATTTCAGCAGCGGAGCTTCCTTTGTTGGATGCTCTTTTCGTGATTGCAC 188
Query 180 ACCCAAGGTAGTGAGAGGAGTGAAGATGCAAGAACTCGTTGAAGAGAACGAAATAAACAA 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCCCAAGGTGGTGAGAGGAGTGAAGATGCAAGAACTCGTTGAAGAGAACGAAATAAACAA 248
Query 240 CAGAGATTTGCTAACCGCTAGTAACCAAACCAAGCTGGAGGCGCCAAGCTTCATGGAAGA 299
| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 249 GAAAGATTTGCTAACCGCTAGTAACCAGACAAAGCTGGAGGCGCCAAGCTTCATGGAAGA 308
Query 300 GATTTTAACAAGAGGGTTAGGGAAAACAAAGATAGGGATGGTGAACATGGAAGAATATGA 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 309 GATTTTAACAAGAGGGTTAGGAAAAACAAAGATAGGGATGGTGAACATGGAAGAATGTGA 368
Query 360 TCTTACTAATTGGAAACGTTATGGAGAAACGGTGCACATACATTTTGAGCGTGTCTCTAA 419
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 369 TCTTACTAATTGGAAACGTTATGGCGAAACGGTTCACATACATTTTGAGCGTGTCTCGAA 428
Query 420 GCTGTTCAAATGGCAAGACTTGTTCCCCGAGTGGATAGATGAAGAGGAAGAAACCGAGGT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GCTCTTCAAATGGCAAGACTTGTTCCCCGAGTGGATAGATGAAGAGGAAGAAACCGAGGT 488
Query 480 TCCCACATGTCCTGAGATACCGATGCCAGATTTTGAAAGCGTT-GAGAAGTTGGATTTGG 538
||||||||||||||||||||| ||||| ||||| |||||| || ||||||||||||||||
Sbjct 489 TCCCACATGTCCTGAGATACCTATGCCCGATTTCGAAAGC-TTAGAGAAGTTGGATTTGG 547
Query 539 TAGTAGTGAAGTTGCCTTGTAATTATCCTGAAGAAGGGTGGAGAAGAGAGGTTTTGAGGT 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 548 TAGTAGTGAAGTTGCCTTGTAATTACCCTGAAGAAGGGTGGAGAAGAGAGGTTTTGAGGT 607
Query 599 TGCAAGTGAACCTAGTTGCGGCTAACTTGGCAGCCAAGAAAGGGAAGACGGATTGGAGAT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TGCAAGTGAACCTAGTTGCGGCTAACTTGGCAGCCAAGAAAGGGAAGACGGATTGGAGAT 667
Query 659 GGAAGAGCAAAGTGTTATTTTGGAGCAAATGTCAACCGATGATTGAGATTTTCCGGTGTG 718
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GGAAAAGCAAAGTGTTGTTTTGGAGCAAATGTCAACCGATGATTGAGATTTTCCGGTGTG 727
Query 719 ATGATTTGGAGAAGAGAGAGACAGATTGGTGGTTGTATCGCCCTGAGGTGGTTAGGTTAC 778
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 728 ATGATTTGGAGAAGAGAGAGGCAGATTGGTGGCTGTATCGCCCTGAGGTGGTTAGGTTAC 787
Query 779 AACAGAAG-CTTAGTTTGCCAATCGGATCTTGCAATCTTGCTCTTCCTTTGTGGGCACCA 837
||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 788 AACAG-AGACTCAGTTTGCCAGTCGGATCTTGCAATCTTGCTCTTCCTTTGTGGGCACCA 846
Query 838 CAAGGTGTAGACAAAGTGTATGACCTATCGAAGATAGAAGCAGAGACAAAACGACCAAAA 897
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 847 CAAGGTGTAGACAAAGTGTATGACCTAACGAAGATAGAAGCAGAGACAAAACGACCAAAA 906
Query 898 CGTGAAGCCTACGTAACAGTCCTCCATTCTTCCGAGTCTTATGTCTGTGGTGCCATAACT 957
||||||||||||||||| || || || |||||||||||||||||||||||||||||||||
Sbjct 907 CGTGAAGCCTACGTAACTGTTCTTCACTCTTCCGAGTCTTATGTCTGTGGTGCCATAACT 966
Query 958 TTGGCTCAAAGCCTTCTTCAGACAAACACCAAACGCGATCTTATCCTTCTCCACGATGAT 1017
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TTGGCTCAAAGCCTCCTTCAGACAAACACCAAACGCGATCTTATCCTTCTCCACGATGAC 1026
Query 1018 TCCATCTCCATTACCAAACTTCGAGCTCTCGCGGCCGCAGGATGGAAGCTTCGTCGGATC 1077
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1027 TCCATCTCCATTACCAAACTTCGAGCTCTCGCCGCCGCAGGATGGAAGCTTCGTCGGATC 1086
Query 1078 ATCCGAATAAGAAACCCACTAGCCGAGAAGGACTCTTACAATGAATACAATTACAGCAAG 1137
|| ||||| ||||||||||| || ||||||||||| |||||||||||||| |||||||||
Sbjct 1087 ATTCGAATCAGAAACCCACTTGCGGAGAAGGACTCGTACAATGAATACAACTACAGCAAG 1146
Query 1138 TTTCGACTTTGGCAATTGACAGATTATGACAAAGTGATCTTCATTGATGCTGACATCATC 1197
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1147 TTTCGACTCTGGCAATTGACAGATTACGACAAAGTGATCTTCATTGATGCCGACATCATC 1206
Query 1198 GTCCTACGTAACCTAGATCTTCTCTTCCATTTTCCTCAGATGTCAGCCACCGGAAATGAT 1257
||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1207 GTCTTACGTAACCTTGATCTTCTCTTCCATTTTCCTCAGATGTCGGCCACCGGAAATGAT 1266
Query 1258 GTCTGGATATTTAATTCAGGCATCATGGTCATCGAGCCTTCTAATTGTACGTTTAGTACG 1317
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1267 GTATGGATATATAATTCAGGCATCATGGTCATCGAGCCTTCTAATTGTACGTTTACTACA 1326
Query 1318 ATCATGAGCCAGAGAAGCGAGATCGTTTCATACAACGGCGGAGATCAAGGGTACCTAAAC 1377
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1327 ATCATGAGCCAGCGAAGCGAGATCGTTTCATACAACGGTGGAGATCAAGGGTACCTAAAC 1386
Query 1378 GAGATATTTGTGTGGTGGCACCGATTGCCTCGACGAGTAAACTTTCTGAAGAACTTCTGG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GAGATATTTGTGTGGTGGCACCGATTGCCTCGACGAGTAAACTTTCTGAAGAACTTCTGG 1446
Query 1438 TCGAACACAACCAAAGAAAGAAACATGAAGAACAACCTCTTCGCTGCGGAGCCTGC-TCA 1496
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||
Sbjct 1447 TCGAACACAACCAAAGAAAGAAACATCAAGAACAACCTCTTCGCCGCGGAGCC-GCCTCA 1505
Query 1497 GGTCTACGCGGTCCACTACTTAGGTTGGAAACCATGGCTTTGCTATAGAGACTACGACTG 1556
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1506 GGTCTACGCGGTCCACTACTTAGGTTGGAAACCATGGCTTTGCTATAGGGACTACGATTG 1565
Query 1557 CAACTACGACGTGGATGAGCAATTAGTGTACGCTAGCGATGCGGCTCACGTTAGGTGGTG 1616
||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1566 CAACTACGACGTGGACGAGCAGTTGGTGTACGCTAGTGATGCGGCTCACGTTAGGTGGTG 1625
Query 1617 GAAAGTTCACGACTCCATGGACAAAGCTTTGCAAAAGTTTTGCAGGCTGACGAAGAAGAG 1676
|||||| ||||||||||||||| | || |||||||||||||||||||||||||| |||||
Sbjct 1626 GAAAGTGCACGACTCCATGGACGATGCATTGCAAAAGTTTTGCAGGCTGACGAAAAAGAG 1685
Query 1677 GAGAACGGAGATCAACTGGGAGAGGAGGAAAGCAAGGCTTAGAGGTTCCACTGATTACCA 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1686 GAGAACGGAGATCAACTGGGAGAGGAGGAAAGCAAGGCTTAGAGGTTCCACTGATTATCA 1745
Query 1737 TTGGAAGATCAATGTCACTGATCCAAGACGACGTC 1771
|||||||||||||||||||||||||||||||||||
Sbjct 1746 TTGGAAGATCAATGTCACTGATCCAAGACGACGTC 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5