BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328437
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32950.1 | Symbols: | Protein phosphatase 2C family protein... 1458 0.0
> AT4G32950.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:15904444-15906010 REVERSE LENGTH=981
Length=981
Score = 1458 bits (789), Expect = 0.0
Identities = 920/982 (94%), Gaps = 14/982 (1%)
Strand=Plus/Plus
Query 1 ATGGGATTTTGTTTGTGTTTATCCTCAGGAGGATCAACAGATCGAAA-TCAGATTTATGA 59
|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1 ATGGGATTTTGTTTTTGTTTATCCTCAGGAGGATCAACAGAT-AAAAGTCAGATTTATGA 59
Query 60 GATAACTGATTATGGACAAGAAAATGCAGTTTTATACTCTG------A---TGTTCCTCA 110
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 60 GATAACTGATTATGGACAAGAAAATGCAGTTTTATACTCTGACCACCATGTTGTTCCTCA 119
Query 111 AGACTTTGGCTCTGTCTCTTCTTTAGCCGGAGGAAAGGGCTTGAACCAAGATGCTGCCAT 170
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 AAACTTGGGCTCTGTCTCTTCTTTAGCCGGAGGCAAGGGCTTGAACCAAGATGCTGCCAT 179
Query 171 TCTCCACCTGGGATATGGAACACAAGAAGGAGCGTTATGTGGAGTGTTTGATGGGCATGG 230
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCCACCTGGGATATGGAACAGAAGAAGGAGCGTTATGTGGAGTGTTTGATGGGCATGG 239
Query 231 ACCGAGAGGTGAATTCGTAAGCAAGATCGTAAGGAACCAATTGCCATCTATACTATTAAG 290
||||||||||| || || ||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 240 ACCGAGAGGTGCGTTTGTGAGCAAGAACGTAAGGAACCAATTGCCATCTATACTCTTAGG 299
Query 291 TCATATGAATAATCATTCAGTGACTCGAGATTGGAAACTCATTTGCGAAACATCGTGTTT 350
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 300 CCACATGAATAATCATTCAGTGACTCGAGACTGGAAACTCATATGCGAAACATCGTGTTT 359
Query 351 GGAGATGGACAAAAGAATTCTTAAAGTTAAAAAGATTCATGATTGCTCTTCTTCTGGAAC 410
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 GGAGATGGACAAAAGGATTCTTAAAGTTAAAAAGATTCATGATTGCTCTGCTTCTGGAAC 419
Query 411 TACTGCTGTTCTCGCCGTTAAACATGGAAACCAAGTGATGGTGGCAAATCTTGGAGATTC 470
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 TACTGCTGTTCTCGCCGTTAAACATGGAAATCAAGTGATGGTGGCAAATCTTGGGGATTC 479
Query 471 AAGGGCTGTGATGATTGGAACAAGTGAGAATGGAGAAACCAAGGTGGTTCAGTTGACCAA 530
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 480 AAGGGCTGTCATGATTGGAACAAGTGAGGATGGAGAAACCAAGGTGGCTCAGTTGACCAA 539
Query 531 TGACCTGAAGCCAAGTGTCCCAAGCGAAGCGGAGAGAATAAGGAAACGAAACGGAAGGGT 590
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TGACCTGAAGCCAAGTGTCCCAAGCGAAGCGGAGAGAATAAGGAAAAGAAACGGAAGGGT 599
Query 591 ATTGGCTTTAGAGTCGGAACCTCACCTTCTAAGAGTTTGGCTTCCAACCGAAAACCGACC 650
|| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 600 GTTAGCTTTGGAGTCGGAACCTCACATTCTGAGAGTTTGGCTTCCAACCGAAAACCGACC 659
Query 651 AGGCCTAGCCATGTCCCGGGCTTTTGGTGATTTCCTCCTTAAAAGCTACGGTGTCATTGC 710
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGCCTAGCCATGTCGCGGGCTTTTGGTGATTTCCTCCTTAAAAGCTACGGTGTCATTGC 719
Query 711 GACTCCACAAGTCTCTACGCATCAAATCACTTCCAGCGACCAATTTCTACTGCTTGCTTC 770
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GACTCCGCAAGTCTCTACGCATCAAATCACTTCCAGCGACCAATTTCTACTCCTTGCTTC 779
Query 771 TGATGGGGTGTGGGATGTACTTAGTAACGAAGAAGTGGCAACGGTGGTGATGAAATCAGA 830
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 780 AGACGGGGTGTGGGATGTACTTAGTAACGAGGAAGTGGCAACGGTGGTGATGAAGTCAGC 839
Query 831 AAGTGAAGCAGGAGCGGCCAACGCGGTGGCAGAGGCGGCGACTAATGCGTGGATCCAGAA 890
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGTGAGGCAGGAGCGGCCAACGAGGTGGCAGAGGCGGCGACTAATGCGTGGATCCAGAA 899
Query 891 ATATCCAACGGTTAAGGTTGATGATATCTCTGTCGTGTGTCTCCCTCTCAACTACAAG-A 949
|| ||||||||||||| |||| ||||||||||||||||||||| |||||||| | ||| |
Sbjct 900 ATTTCCAACGGTTAAGATTGACGATATCTCTGTCGTGTGTCTCTCTCTCAACAAGAAGCA 959
Query 950 GG--CCACAGCCACAAATATGA 969
||||||||||||||||||
Sbjct 960 TAATCCACAGCCACAAATATGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5