BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328460

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32717.1 | Symbols: SCRL24 | SCR-like 24 | chr4:15786337-157...   399    5e-111


> AT4G32717.1 | Symbols: SCRL24 | SCR-like 24 | chr4:15786337-15786841 
FORWARD LENGTH=270
Length=270

 Score =  399 bits (216),  Expect = 5e-111
 Identities = 247/262 (94%), Gaps = 2/262 (1%)
 Strand=Plus/Plus

Query  1    ATGAGATCTGTTACTTGGTTTATAGTTTCTTATATTCTCATGTTTCTCGTTCTGAGAGGT  60
            ||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct  1    ATGAGATCTGTTATTTGGTTTATAGTTTCTTATACTCTCATGTTACTCGTTCTGAGAGGT  60

Query  61   GGTAAAGAAGTGGAAGCAGAGAAACTGTGTACAACAATAGGAGACTTGGACGGTAAATGT  120
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   GGTAAAGAAGTGGAAGCTGAGAAACTGTGTACAACGATAGGAGACTTGGACGGTAAATGT  120

Query  121  AGC-AATGACGGAGAAAAGATGTGCATGAGATACATGACGGATCAATCTaaaaaaaaGTT  179
            ||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  AGCCAA-GACGGAGAAAAGTTGTGCATGAGATACATGACTGATCAATCTAAAAAAAAGTT  179

Query  180  TCTTAGTTGCACATGCAATAACGTTATCATGTTACACAAGTACAAACATTATTGCGAATG  239
            |||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct  180  TCTTAGCTGCACATGTAATAACGTTGTTATGTTACACAAGTACAAACATTATTGCGAATG  239

Query  240  TAAATCTCATTGTACTCCTAAA  261
            | |||||||||||||||| |||
Sbjct  240  TCAATCTCATTGTACTCCAAAA  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5