BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328473
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32600.1 | Symbols: | RING/U-box superfamily protein | chr4... 2163 0.0
> AT4G32600.1 | Symbols: | RING/U-box superfamily protein | chr4:15723434-15726109
FORWARD LENGTH=2027
Length=2027
Score = 2163 bits (1171), Expect = 0.0
Identities = 1288/1344 (96%), Gaps = 9/1344 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGTTTCTCTTCTGAAACAACAACATCGTATTACAAATCAAGCTGATACTTTTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ATGGGTGTTTCTCTTCTGAAACAACAACATCGTATTACAAATCAAGCTGATACTTTTTCT 353
Query 61 AGATTCATGGAAAGATCACCAGAGAATAATCTTAGCCGAAATGAGCACATCATCATTGAC 120
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 354 AGATTCATGGAAAGATCACCAGAGAATAATCTAAGCAGAAATGAGCACATCATCATTGAC 413
Query 121 ATTCCAAGAAATGCCGCCATTGCATCATCATCTTCATCTCATGATAGAATCTCAAATGTT 180
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 414 ATTCCAAGAAATGCCGCCATTGCATCATCATCATCTTCTCATGATAGAATCTCAAATGTT 473
Query 181 TTGGAACCTTTACAACATGAGGAAGATAGACCTTCAACTGTTCCTCCCATGGCTGCTCCT 240
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 474 TTGGAACCTTTACAACATGAGGAAGAGAGACCTTCTACTGTTTCTCCCATGGCTGCTCCT 533
Query 241 CAGCCAGCTACAGCTACAGcttcttcttcttcttctATGCGATCAAATCCTAGAAGTGTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CAGCCAGCTACAGCTACAGCTTCTTCTTCTTCTTCTATGCGATCAAATCCTAGAAGTGTC 593
Query 301 CGTCGTAGAAGAAGTCCTTTAAATTCTGGCTTATGGATTTCTATTGAACTATTCCTCACT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 594 CGTCGTAGAAGAAGTCCTTTGAATTCTGGCTTATGGATTTCTATTGAACTATTCCTCACT 653
Query 361 GTTGGTCAGATCATTGCAGCCATTGTCGTTTTGTCTTTGTCAAAACATGAGCATCCTCGT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTGGTCAGATCATTGCAGCTATTGTCGTTTTGTCTTTGTCAAAACATGAGCATCCTCGT 713
Query 421 GCACCCTTGTTCACCTGGATTGTGGGTTATGCTTGTGGATGCGTTGCCACACTCCCACTT 480
|| || |||||||| |||||||| |||||||| |||||||||||||| |||||||| |||
Sbjct 714 GCTCCTTTGTTCACTTGGATTGTTGGTTATGCGTGTGGATGCGTTGCTACACTCCCGCTT 773
Query 481 TTGTACTGGAGATATTATCATTCGAATCAGGCTTCTGAACAGGATTCTGGCCAGCATCGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 774 TTGTACTGGAGATATTATCATTCGAATCAGGCTTCTGAACAGGATTCTGGTCAGCACCGT 833
Query 541 CCTAATCTTAATGTTGCAGCTGGACCTTTCGCCTTCTCGATTTCAAGGACATCTGAAGGA 600
|||||||||||||||||||| ||||| |||||||||||||| || |||||||| |||| |
Sbjct 834 CCTAATCTTAATGTTGCAGCAGGACCATTCGCCTTCTCGATATCCAGGACATCCGAAGCA 893
Query 601 GATGGTCGACAGACTAATACCACCTCTTCTCGTGTTAGTAGATATCCTGGGTTCATAAGT 660
|||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 894 GATGGTCGACAGACCAATACCACCTCTTCTCGTGGTAGTAGATATCCTGGGTTTATAAGT 953
Query 661 GCTGCCAGACTTAAAGTTATCGTGGAATACTTCAAAATGGCTCTGGATTGCTTCTTTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GCTGCCAGACTTAAAGTTATCGTGGAATACTTCAAAATGGCTCTGGATTGCTTCTTTGCG 1013
Query 721 GTGTGGTTTGTGGTAGGTAATGTATGGATATTTGGAGGGCATTCATCTGCTGCCGAGGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTGTGGTTTGTGGTAGGTAATGTATGGATATTTGGAGGGCATTCATCTGCTGCCGAGGCT 1073
Query 781 CCTAACTTGTACAGATTATGTTTAGTGTTTCTTACCTTTAGCTGTATTGGCTACGCGATG 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CCTAACTTGTACAGGTTATGTTTAGTGTTTCTTACCTTTAGCTGTATTGGCTACGCGATG 1133
Query 841 CCCTTCATCCTCTGTACAACAATATGTTGTTGCTTGCCGTGCATAATCTCAATTCTCGGA 900
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1134 CCCTTCATCCTCTGTACAACAATATGTTGCTGCTTGCCTTGCATAATCTCAATTCTCGGA 1193
Query 901 TATAGAGAAGATTTAACTCAACCTCGAGGTGCCACACCTGAGTCGATTAATGCATTGCCA 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1194 TATAGAGAAGATTTAACGCAACCTCGAGGTGCCACACCTGAGTCGATTAATGCGTTGCCG 1253
Query 961 ACTCATAAGTTTAAGTTGAAGAAAAGCAGAAGTAGTGGCGATGACAATGGTTCAAGTACT 1020
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1254 ACTCATAAATTTAAGTTGAAGAAAAGCAGAAGTAATGGCGATGACAATGGTTCAAGTACT 1313
Query 1021 AGCGAAGGTGGAGTCGTGGCGGCTGGAACAGATAACGAACGTGCTATTTCAGGAGAGGAT 1080
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1314 AGCGAAGGTGGAGTTGTGGCGGCTGGAACAGATAACGAACGAGCTATTTCAGGAGAGGAC 1373
Query 1081 GCAGTCTGTTGCATTTGCTTAGCGAAATATGCAAATAATGAGGAGTTGAGAGAGCTTCCA 1140
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1374 GCAGTCTGTTGCATTTGCTTAGCGAAATATGCGAATAACGAGGAGTTAAGAGAGCTTCCA 1433
Query 1141 TGCTCACATTTCTTCCACAAAGAGTGCGTTGACAAATGGCTGAAGATCAATGCCTCTTGC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TGCTCACATTTCTTCCACAAAGAGTGCGTTGACAAATGGCTGAAGATCAATGCCTCTTGC 1493
Query 1201 CCTCTTTGCAAGAGCGAAGTTGGGGAGAAGAACTCTGATTTGACAAGCCAAGGGATCTTG 1260
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1494 CCTCTATGCAAGAGCGAAGTTGGGGAGAAGAACTCTGATTTGACTAGCCAAGGGATCTTA 1553
Query 1261 AGCTCGCTCTCTTCTGGGGAAAACGATAACCATCAACAACA--A-CAAC------GGAGT 1311
| ||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 1554 ACCTCGCTCTCTTCTGGGGAAAACGATAACCATCAACAACAGCAACAACAACAACGGAGT 1613
Query 1312 GAACTTAGAGTTGATAATGATTTG 1335
|||||||||||||| |||| ||||
Sbjct 1614 GAACTTAGAGTTGAGAATGGTTTG 1637
Score = 195 bits (105), Expect = 1e-48
Identities = 131/143 (92%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 1330 GATTTG--CTGTGTTCGAGAAAACGGCACAAGAAAGCTGTTTTGCGATGTTCCTACACAA 1387
|||||| || ||| ||||||||||||| || ||| |||| |||||||||||||||||
Sbjct 1664 GATTTGCTCTATGTCCGAGAAAACGGCA-AA-TTAGCCGTTTGGCGATGTTCCTACACAA 1721
Query 1388 AATGGGGTTTGCTTCTCATTGCTAAGAAGGTGAAGAAAGACACAGCGAAGATCCTGTTCT 1447
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1722 AATGGGGTTTGCTTCTCATTGCTAAGAAGGTGAAGAAAGACACGGCGAAGATCCTGTTCT 1781
Query 1448 GTAAATGCTTTTTGCAGTTGTGA 1470
||||||||||||||| |||||||
Sbjct 1782 GTAAATGCTTTTTGCCGTTGTGA 1804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5