BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328538
Length=3666
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, puta... 4080 0.0
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin r... 1110 0.0
> AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=3609
Length=3609
Score = 4080 bits (2209), Expect = 0.0
Identities = 3174/3619 (88%), Gaps = 149/3619 (4%)
Strand=Plus/Plus
Query 91 GAAGATACAGTCGGAAGTAAAGAAGAGGTTTGTCCTCTTGGCGAGGTTGAAGCA-ATTTT 149
||||| |||| ||||||| | | ||| |||||||||||||||| ||||| | |||||
Sbjct 97 GAAGAAACAGGCGGAAGT--A-ACCAGGATTGTCCTCTTGGCGAGATTGAA-AAGATTTT 152
Query 150 GGACCGTGAATTGTGTCCTACTGCATCTAACGATCCGGATTCTTCTGACAACGGGACACC 209
||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 153 GGACCGTGAATGGCGTCCTACTGCATCTAACAATCCGAATTCTTCTGACAACGGGACACC 212
Query 210 AACCCAAGTTTTTGTGAAACAATATCAGGTGAAGTGGAAGGGAAAATCGTACCTGCACTG 269
||||| |||| | ||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 213 AACCCTAGTTGTCGTGAAACAATATCTTGTGAAGTGGAAGGGGTTATCGTACTTGCACTG 272
Query 270 CTCTTGGGTGCCCGAGCAGGAATTCGAGAAGGCTTACAAGTCCCATCCTCGTTTAAAATT 329
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 273 CTCTTGGGTGCCCGAGCAGGAGTTCGAGAAGGCTTACAAGTCCCATCCTCATTTAAAACT 332
Query 330 AAAATCAAGGGTCGA-CAAATTTAACGCTGAC-AAGGACAAATTCATCGCTGAGAACGGA 387
||||| |||||| || || |||||||||| | | |||| |||||||||||||||||||
Sbjct 333 AAAATTAAGGGT-GACCAGGTTTAACGCTG-CTATGGACGTATTCATCGCTGAGAACGGA 390
Query 388 G---ATGAGTATATTGCCATTCGTCCTGAGTGGACAACTGTTGACCGGATTATTGCTTGC 444
| |||||| ||| |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 391 GCTCATGAGTTTATCGCCATTCGTCCTGAATGGAAAACTGTTGACCGGATTATTGCTTGC 450
Query 445 CGGGGAA-GAGGTGATTTTAAGGAGTATCTAGTTAAGTACAAAGAACTTTCTTA-TGAAG 502
| ||||| ||| |||| |||||||||| || |||||||||||||||||||| |||
Sbjct 451 C-GGGAAGGAGATGATGGGGAGGAGTATCTGGTGAAGTACAAAGAACTTTCTTACAGAA- 508
Query 503 AAAGTTACTGGGAATCAGAATCTCTCATCTCAAAGTTCCAGAACGAAGTTCAAAGGTTTA 562
| |||||||||||||| |||||| ||||||| | |||||||| ||| | ||||||||||
Sbjct 509 ATAGTTACTGGGAATCTGAATCTGACATCTCAGATTTCCAGAATGAAATCCAAAGGTTTA 568
Query 563 AGGATATAAACTCTCGCTCTCGTAGAGATAAATATGTCGGATACAAGAGAAATCAAAAGG 622
|||||||||||||| |||||||||||||||||||||||| | | ||||||||| | |||
Sbjct 569 AGGATATAAACTCTAGCTCTCGTAGAGATAAATATGTCGAAAATGAGAGAAATCGAGAGG 628
Query 623 AATTCAAACAGTTTGAACATACTCCTGAATTTCTTACAGGCACATTGCATACATACCAGC 682
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AATTCAAACAGTTTGATCTTACTCCTGAATTTCTTACAGGCACATTGCATACATACCAGC 688
Query 683 TCGAAGGGCTGACTTTCTTAAAGCATTCATGGTCCAAGGGAACCAATGTAATCCTTGCGG 742
|||||||||||| |||| ||| | |||||||||||||| ||||||||||||||||||||
Sbjct 689 TCGAAGGGCTGAATTTCCTAAGGTATTCATGGTCCAAGAAAACCAATGTAATCCTTGCGG 748
Query 743 ATGAAATGGGACTAGGCAAAACTATTCAGAGCATTGCCTTCTTGGCTTCTTTGTTCGAGG 802
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 749 ATGAAATGGGACTAGGCAAAACTATTCAGAGCATTGCCTTCTTGGCCTCTTTGTTCGAGG 808
Query 803 AAAACTTATCTCCTCATCTAGTTGTTGCTCCTCTCTCAACCCTCCGTAACTGGGAGAGGG 862
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 809 AAAACTTATCTCCTCATCTAGTTGTTGCTCCTCTCTCAACCATCCGTAACTGGGAGAGGG 868
Query 863 AATTTGCCACCTGGGCACCACATATGAATGTGGTTATGTACACTGGG-ACTTCGGAAGCA 921
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 869 AATTTGCCACCTGGGCACCACATATGAATGTGGTTATGTACACTGGGGA-TTCGGAAGCA 927
Query 922 CGTGATGTTATTTGGGAACATGAGTTCTACTTCCCTAAAGGGCGTAAAATTAAGTTTGAT 981
||||||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 928 CGTGATGTTATATGGGAACATGAGTTCTACTTCTCTGAAGGGCGTAAAAGTAAGTTTGAT 987
Query 982 GTCCTCCTCACGTCATATGAGATGATTAACCAAGACACATCAGTTCTGAAACCAATCAAG 1041
||| | |||||| | ||||||||| || ||| || | ||||||||||| |||||||||
Sbjct 988 GTCTTGCTCACGACGTATGAGATGGTTCACCCAGGGATATCAGTTCTGAGTCCAATCAAG 1047
Query 1042 TGGACGTGCATGATTGTTGATGAAGGCCATCGGTTGAAAAATAAGGATTCAAAGCTATAC 1101
||||||||||||||| |||||||||||||||||||||||||| || | |||||||| |||
Sbjct 1048 TGGACGTGCATGATTATTGATGAAGGCCATCGGTTGAAAAATCAGAAGTCAAAGCTGTAC 1107
Query 1102 TCTTCATTGAATCAGTTTACGAGTAAGCATCGCGTTCTGTTGACCGGAACACCACTTCAG 1161
|||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1108 TCTTCATTGAGTCAGTTTACAAGTAAGCATATCGTTCTGTTGACCGGAACACCACTTCAG 1167
Query 1162 AACAACTTGGATGAACTTTTCGTTCTCATGCATTTTCTTGATGCCGTCAAGTTTGCGAGT 1221
||||||||| |||||||||||| ||| ||||||||||||||||| | |||||||| ||||
Sbjct 1168 AACAACTTGAATGAACTTTTCGCTCTGATGCATTTTCTTGATGCGGACAAGTTTGGGAGT 1227
Query 1222 ATGGAGAACTTTCAAAAGGAGTTTAAGGATATAAATCAAGAGAAGCAGATTTCAAGACTC 1281
||||||| |||||| | | | ||| ||| || | | || ||||||||||||||||
Sbjct 1228 TTGGAGAAGTTTCAA--G-A-TATAA--ATA-AAG--A-G-GA-GCAGATTTCAAGACTC 1275
Query 1282 CACCAAATGTTGGCTCCACATCTGCTTAGAAGGTTAAAGAAAGACGTGCTCAAGGATAAG 1341
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1276 CACCAAATGTTGGCTCCGCATCTGCTCAGAAGGTTAAAGAAAGACGTGCTCAAGGATAAG 1335
Query 1342 ATGCCCCCAAAGAAGGAGCTCATTTTGCGTGTTGATCTGAGCAGCCAGCAAAAAGAAGTG 1401
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1336 GTGCCCCCAAAGAAGGAGCTCATTTTGCGTGTTGATATGAGCAGCCAGCAAAAAGAAGTG 1395
Query 1402 TACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAAAGAAACGAGGTGCTAAAATA 1461
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1396 TACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAAAGAAACGAGATGCTAAAATA 1455
Query 1462 TCTAACGTGCTAATGGA-TCTACGCAAAGTTTGCTCTCATCCGTATCTGTTAAAAGACGT 1520
||||||||||||||| | | ||||| |||||||||||||||||||||||||| |||| |
Sbjct 1456 TCTAACGTGCTAATGAAAT-TACGCCAAGTTTGCTCTCATCCGTATCTGTTACCAGACTT 1514
Query 1521 TGAGCCAAGACTTGAAGACGCAAATGAAGCTTTTACAAAACTCTTGGAAGCTTCTGGAAA 1580
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1515 TGAGCCAAGATTTGAAGACGCAAATGAAGCTTTTACAAAACTATTGGAAGCTTCCGGAAA 1574
Query 1581 GTTGCAATTGTTAGACAAAATGATGGTCAAACTCAAAGAACAGGGGCACAGAGTGCTAAT 1640
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1575 GTTGCAACTGTTAGACAAAATGATGGTCAAACTCAAAGAGCAGGGGCACAGAGTGCTAAT 1634
Query 1641 CTATTCACAATTCCAACACACGCTTGACCTTTTCCAAGATTACTGCAGTTTCAAGAGTTG 1700
|||| | |||||||||||||| ||| ||||||| |||| |||| || |||||||| |||
Sbjct 1635 CTATACCCAATTCCAACACACCCTTTACCTTTTGGAAGACTACTTCACTTTCAAGAATTG 1694
Query 1701 GAAATATGAACGGATTGATGGAAAGGTCGGTGGAGCTGAGAGGCAAGCAAGCATAGATCG 1760
||| ||||||||||||||||||||| || ||||| |||||||||||| ||| ||||||||
Sbjct 1695 GAATTATGAACGGATTGATGGAAAGATCAGTGGACCTGAGAGGCAAGTAAGAATAGATCG 1754
Query 1761 GTTTAATGCAGAAAAGTCTAACCGGTTCTGTTTTTTGCTCACTACAAGAGCTGGTGGAAT 1820
||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1755 GTTTAATGCAGAAAACTCGAACCGGTTCTGTTTTTTGCTCAGTACAAGAGCTGGTGGAAT 1814
Query 1821 AGGAATAAACCTTGCAACAGCTGATACAGTCATCATTTATGACAGTGATTGGAATCCTCA 1880
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 AGGGATAAACCTTGCAACAGCTGATACAGTCATCATTTATGACAGTGATTGGAATCCTCA 1874
Query 1881 TGCTGATCTCCAGGCTATGGCTAGAGCTCATCGTCTTGGCCAAACAAATAAGGTCATGAT 1940
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 1875 TGCTGATCTCCAGGCTATGGCTAGAGTTCATCGGCTTGGCCAAACAAATAAGGTAATGAT 1934
Query 1941 TTACAGGCTCATTCACCGAGCTACGGTGGAAGAGCGGATGGTGGAGATTACTAAGAAGAA 2000
||||| || |||||| || ||| || ||||| |||||| ||||||| || ||||| ||
Sbjct 1935 CTACAGACTGATTCACAAAGGTACTGTAGAAGAACGGATGATGGAGATAACCAAGAACAA 1994
Query 2001 GATGCTTCTAGAGCATCTCGTAGTGGGGAATATGGAAAACCCACATCTTCGGCAGGACGT 2060
||||||||||||||||||||| ||||| || | | ||| | |||| | |||||||
Sbjct 1995 GATGCTTCTAGAGCATCTCGTCGTGGG-AA-A---ACAAC--A--TCTTTGTCAGGACGA 2045
Query 2061 GTTAGATGACATCATCAAATATGGTTCCAAGGAGCTTTTCTCTGAAGAGAATGATGAAGC 2120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2046 GTTAGATGACATCATCAAATATGGTTCCAAGGAACTTTTCTCTGAAGAGAATGATGAAGC 2105
Query 2121 AGGGAAGTCTGGAAAAATCCATTATGATGATGCTGCTATTGAAAAGTTGCTTGACCGTGA 2180
||||| |||||||||||||||||| |||||||||||||| ||| ||||||| || ||| |
Sbjct 2106 AGGGAGGTCTGGAAAAATCCATTACGATGATGCTGCTATCGAACAGTTGCTAGATCGTAA 2165
Query 2181 TCATGTAGATGCTAAGGAGGTCTCACTGGATGATGAGGAGGATAA-TGGTTTTTTAAAGA 2239
||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||
Sbjct 2166 TCATGTAGATGCTGTGGAGGTCTCACTGGATGATGAGGAGGA-AACTGATTTTTTAAAGA 2224
Query 2240 ATTTCAAGGTGGCCACTTTTAAGTATATAGATGAC-AA--TGAGGCTGCAGCATCAGAGG 2296
||||||||||||| | |||| ||||| ||||||| || |||||||||||||| |||||
Sbjct 2225 ATTTCAAGGTGGCTAGTTTTGAGTATGTAGATGATGAAAATGAGGCTGCAGCATTAGAGG 2284
Query 2297 AGGCACAAGCTATTGAAAACAATTCTTCAG-A-----T----A--GAACAAGTCATTGGA 2344
||||||||||||| |||||||||||||||| | | | |||||||||| ||||
Sbjct 2285 AGGCACAAGCTATAGAAAACAATTCTTCAGTAAGAAATGCTGATAGAACAAGTCACTGGA 2344
Query 2345 AAGAGTTGCTAAAAGACAAATATGAAGTGCAACAAGCCGAAGAGCTCAATGCTCTTGGAA 2404
|||| ||||| |||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 2345 AAGATTTGCTGAAAGACAAATATGAAGTGCAACAAGCTGAGGAGCTCAGTGCTCTTGGAA 2404
Query 2405 AGAGGAAGCGAAACGGCAAGCAGGTGATGTATGCTGAAGAAGATGATCTTGATGGTTTAG 2464
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2405 AGAGGAAGAGAAACGGCAAGCAGGTGATGTATGCTGAAGA---TGATCTTGATGGTTTAG 2461
Query 2465 AAGTGACCTCTGATGAGAAGGAGGAAGATTATCTTGATGATTTAGAAGTGATCTCTGATG 2524
||| | |||||||||| |||| ||| ||| ||||||||||||| |||||| ||||||||
Sbjct 2462 AAGAAATCTCTGATGAGGAGGACGAATATTGTCTTGATGATTTAAAAGTGACCTCTGATG 2521
Query 2525 AGAAGGAGGAAGCAGATGACGCCGAGCCAACTGTTGTTAAAGCAGCTCGACAGAGAAAGC 2584
|| |||||||||||||||| | || | | || |||||||||||||||||||
Sbjct 2522 AGGAGGAGGAAGCAGATGA-----A-CC--C-G-----AA-GCAGCTCGACAGAGAAAGC 2566
Query 2585 CGAGGACGGTTACAAAGCCTTACAGAAAAAGGAATCGCGATAAATCGGAGT---TACCTG 2641
||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||
Sbjct 2567 CGAGGACGGTTACAAGGCCTTACAGAAAAAGGGCTCGCGATAATTCGGAGGAAATACCTT 2626
Query 2642 TGATGGAAGGCGGAGGGAAATCTTTCGA-GGTGCTAGGTTTTAAC-AGGACTGAAAGGGA 2699
|||||||||||| ||||| || | || | |||||| || |||||| || ||||| |||||
Sbjct 2627 TGATGGAAGGCGAAGGGAGATATCTC-ATGGTGCTGGGATTTAACGAG-ACTGAGAGGGA 2684
Query 2700 AACCTTTTTACGTACGTTTAAGAGGTATGGAGCTGGAGACTTTGATTGGAAGGAGTTTAT 2759
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2685 TATATTTTTACGTACGTTTAAGAGGTATGGAGCTGGAAACTTTGATTGGAAGGAGTTTGT 2744
Query 2760 TCATCCCTTACATATGAAGACCTTTGACGAGATAAATAAGTATGGAATATTGTTTTTGCA 2819
| |||||||| | |||||||||| |||||||||||||||||||||||| || |||||| |
Sbjct 2745 TAATCCCTTATACATGAAGACCTATGACGAGATAAATAAGTATGGAATCTTATTTTTGAA 2804
Query 2820 ACACATTGCCGAAAACTCTAA-GAATAATTCTTCAACTTTTTCAGTTATTTCGGCAATGG 2878
|||||||||||||||| ||| || ||||||| ||| |||| ||||||| |||||||||
Sbjct 2805 ACACATTGCCGAAAACCCTACCGA-TAATTCTACAAATTTTAAAGTTATTACGGCAATGG 2863
Query 2879 TCTCTGCAGATGGAATTCCGAAAGAAGGGATAAGAAGTGACGAGCTACTAATGAGCATGA 2938
||| |||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 2864 TCTATGCAGATGGAGTTCCCAAAGAAGGGATAAGCAGTGACGAGCTACTAGTGAGCATGA 2923
Query 2939 CTTTTATGATGCTATTAAAGGAGAAGTGTCAATTTTTGGACGACCATCCGACAGAACCCG 2998
|||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 2924 CTTTTATGATGCTAGTAAAGGAGAAGTGTCAATTTTTGGACAACCATCCGACAGCACCTG 2983
Query 2999 TTTTC-CGTGACTACAG-CATCAGAAAGTACAATTTGAGAAGTGGAGCATTTTCTAAGGA 3056
||||| | | ||||| | |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2984 TTTTCTC-TAACTAC-GTCATCAGTAAGTACAATTTGAGAAATGGAGCATTTTCTAAGGA 3041
Query 3057 AGAACATGATAGGATATTGATTCCTGCTGTTGCCAAGCATGGATATGGAA-ACTGGACGG 3115
|||||||||||||||| |||||||||||||| |||||||||| ||||| | | ||| ||
Sbjct 3042 AGAACATGATAGGATACTGATTCCTGCTGTTTCCAAGCATGGCTATGGTAGA-TGGGTGG 3100
Query 3116 CCGTCGTTGAAGACGAAGAGATAGGGTTCCAAGAGGTTGCCCGAAAAGACCTGAATATCC 3175
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 3101 CCATCGTTGAAGACGAAGAGATAGGGTTCCAAGAGGTTGCCTGCAAAGACCTGAATATCC 3160
Query 3176 CTTTCCCTTACACAGATGCTGAAATTT-CTCTTATAAGAATTCGTGACCATGTGGGAAAA 3234
|||||||| | | ||| || |||| | ||| || ||||||| |||||||||||||||||
Sbjct 3161 CTTTCCCT--C-CTGATACT-AAATCTGCTCGTAAAAGAATTTGTGACCATGTGGGAAAA 3216
Query 3235 CGGTTTAAGAAGATGGAGGATGCGATCAAGTATGAGTACACAGAAAATG-TACATAAGGA 3293
||| ||||||||||||||||||| || |||||||||||| ||||||| | ||| | ||
Sbjct 3217 CGGGTTAAGAAGATGGAGGATGCCATAAAGTATGAGTACGCAGAAAA-GATACTTGCTGA 3275
Query 3294 ACAAGCAGAAGCTAGAAGA-AAGATGATGGATACAGCGGGACCGAGCTTTGCAGCTGCAG 3352
||||||| ||||| ||| | || | | ||| ||| | | ||||| | |||||
Sbjct 3276 ACAAGCAAAAGCT-GAA-ACAA-A-G--GGA-ACA-----A--G--CTTTGTTGATGCAG 3319
Query 3353 ACAAAGAAATGCTTGATGAACTGCCTAAGAATGATCCCATCATTTCAGAAGAAATTTCTG 3412
| |||||||||||| | | | || ||||||||||| |||| || ||| |||||
Sbjct 3320 AAAAAGAAATGCTT-A--A---G---AA---TGATCCCATCACTTCAAAAAAAAATTCTG 3367
Query 3413 CAGCTGCCGTAAACAACAAGCAAA-CTAGGGTTGAAGTGGCTCAACCATACAATCAGAGT 3471
|| ||||||| ||||||||||| | || |||||| |||||||| ||||| ||||||||
Sbjct 3368 CAACTGCCGTTGACAACAAGCAAGGC-AGAGTTGAAATGGCTCAATCATACGATCAGAGT 3426
Query 3472 GTTAATTATGGGAATTCAGG-GATGCCATTCGAGACATATTTAAACATTCAACCGCTGAC 3530
|||||| | | || ||||| || | ||||| ||||||||||| | |||||||||||||
Sbjct 3427 GTTAATGA-G--AAGTCAGGTGA-GTCATTCCAGACATATTTAGATATTCAACCGCTGAA 3482
Query 3531 TCGAATGCTGAGGGAGAGCTTTATA-CCTCTGGAACGTATCAGTGAAAGAA-TAAGTGA- 3587
|||||||| |||||||||||||| | |||||||||| ||||| ||| ||| |||| |
Sbjct 3483 TCGAATGCCGAGGGAGAGCTTTA-AGCCTCTGGAACCTATCAATGAG-GAAATAAGC-AC 3539
Query 3588 TGGGAGTCATTCCAGAAGCGCCGGGACAGATCATGATGTTGAGATGGATGCAGCGGATAA 3647
| || | | | | ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 3540 TAGG---C-T---A-A-GCGTTGGGACAGATCATGATGTAGAGATGGATGCAGCGGATAA 3590
Query 3648 CGTTATTGTGTTGGATTGA 3666
| | |||||| ||||||||
Sbjct 3591 CATCATTGTGCTGGATTGA 3609
> AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10713807-10723986 FORWARD
LENGTH=4402
Length=4402
Score = 1110 bits (601), Expect = 0.0
Identities = 1267/1575 (80%), Gaps = 100/1575 (6%)
Strand=Plus/Plus
Query 969 AATTAAGTTTGATGTCCTCCTCACGTCATATGAGATGATTAACCAAGACACATCAGTTCT 1028
||| |||||||||||||||||||| || ||||||||||| |||| ||| || |||||||
Sbjct 1197 AATCAAGTTTGATGTCCTCCTCACATCGTATGAGATGATCAACCTAGATTCAGCAGTTCT 1256
Query 1029 GAAACCAATCAAGT-GGACGTGCATGATTGTTGATGAAGGCCATCGGTTGAAAAATAAGG 1087
|||||||| |||| ||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1257 AAAACCAATTAAGTGGGA-GTGCATGATTGTTGATGAAGGTCATCGACTGAAAAATAAGG 1315
Query 1088 ATTCAAAGCTATACTCTTCATTGA-ATCAGT-TTACGAGTAAGCATCGCGTTCTGT-TGA 1144
|||||||||| | ||||||||||| | |||| || | ||||| || || |||| | |||
Sbjct 1316 ATTCAAAGCTGTTCTCTTCATTGACA-CAGTATT-CAAGTAACCACCGTATTCT-TCTGA 1372
Query 1145 CCGGAACACCACTTCAGAACAACTTGGATGAACTTTTCGTTCTCATGCATTTTCTTGATG 1204
| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1373 CAGGAACACCACTTCAGAACAACTTGGATGAACTTTTCATGCTCATGCATTTTCTTGATG 1432
Query 1205 CCGTCAAGTTTGCGA-GTATGGAGAACTTTCAAAAGGAGTTTAAGGATATAAATCAAGAG 1263
| | ||||||| || || ||||| | || || ||||||| || ||||| |||||||||
Sbjct 1433 CGGGGAAGTTTG-GAAGTTTGGAGGAGTTCCAGGAGGAGTTCAAAGATATTAATCAAGAG 1491
Query 1264 AAGCAGATTTCAAGACTCCACCAAATGTTGGCTCCACATCTGCTTAGAAGGTTAAAGAAA 1323
||||||| ||||| | ||| ||||||||||||||||| |||| |||||| |||| |||
Sbjct 1492 GAGCAGATCTCAAGGTTGCACAAAATGTTGGCTCCACATTTGCTCAGAAGGGTAAAAAAA 1551
Query 1324 GACGTGCTCAAGGATAAGATGCCCCC-AAAGAAGGAGCTCATTTTGCGTGTTGATCTGAG 1382
||||| | || || | ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1552 GACGTAATGAAAGACA---TGCCCCCCAAA-AAGGAGCTCATTTTGCGTGTTGATCTGAG 1607
Query 1383 CAGCCAGCAAAAAGAAGTGT-ACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAA 1441
||| | ||| |||||| | | |||||||| || ||||| |||||||||||| |||||||
Sbjct 1608 CAGTCTGCAGAAAGAA-TATTACAAAGCTATTTTTACCCGTAATTATCAAGTATTGACAA 1666
Query 1442 AGAAACG-AGGTGCTAAAATATC--T-AA---CGTGCTAATGGA-TCTACGCAAAGTTTG 1493
| ||| | ||||||| |||| || | || | | | ||||| | |||| ||||| ||
Sbjct 1667 A-AAAGGGAGGTGCTCAAATTTCCCTTAATAACATTATGATGGAAT-TACGAAAAGTATG 1724
Query 1494 CT-CTCATCCGTATCTGTTAAAAGACGTTGAGCCAAG--ACTTGAAGACGCAAATGAAGC 1550
|| | ||||| ||| || || | | ||||||||| | | || | ||||||||||||||
Sbjct 1725 CTGC-CATCCTTATATGCTAGAGGGTGTTGAGCCA-GTTA-TTCACGACGCAAATGAAGC 1781
Query 1551 TTTTACAA-AACTCTTGGAAG-CTTCTGGAAAGTTGCAA-TTGTTAGACAAAATGATGGT 1607
||| | || |||| ||||| | ||| ||||||| ||||| || | ||| |||||||||||
Sbjct 1782 TTTCA-AACAACTTTTGGA-GTCTTGTGGAAAGCTGCAACTTCT-AGATAAAATGATGGT 1838
Query 1608 CAAACTCAAAGAACAGGGGCACAGAGTGCTAATCTATTCACAATTCCAACACACGCTTGA 1667
|||||| ||||| || || |||||||| ||||| || |||| || || || | ||| ||
Sbjct 1839 CAAACTGAAAGAGCAAGGACACAGAGTCCTAATATACACACAGTTTCAGCATATGCTGGA 1898
Query 1668 CCTT--TTCCAAGATTACTGCAGTT-TCAAGAGTTGGAAATATGAACGGATTGATGGAAA 1724
| || || |||| ||||| | | |||| ||| | || || || |||||||||||
Sbjct 1899 C-TTACTTG-AAGACTACTGTACCCAT-AAGAAATGGCAGTACGAGCGAATTGATGGAAA 1955
Query 1725 GGTCGGTGGAGCTGAGAGGCAAGCAAGCATAGATCGGTTTAATGC-AGAAAAGTCTAACC 1783
||| || ||||||||| ||||| | ||||||||||||| ||||| | |||| ||||||
Sbjct 1956 GGTTGGCGGAGCTGAGCGGCAAATACGCATAGATCGGTTCAATGCCA-AAAATTCTAACA 2014
Query 1784 GGTTCTGTTTTTTGCTCACTACAAGAGCTGGTGGAATAGGAATAAACCTTGCAACAGCTG 1843
||| |||||||||||| | |||||||||||||| |||||||||| |||||||| ||||
Sbjct 2015 AGTTTTGTTTTTTGCTCTCCACAAGAGCTGGTGGCTTAGGAATAAATCTTGCAACGGCTG 2074
Query 1844 ATACAGTCATCATTTATGACAGTGATTGGAATCCTCATGCTGATCTCCAGGCTATGGCTA 1903
||||||| ||||||||||||||||| |||||||||||||||||||| || || |||||||
Sbjct 2075 ATACAGTAATCATTTATGACAGTGACTGGAATCCTCATGCTGATCTTCAAGCAATGGCTA 2134
Query 1904 GAGCTCATCGTCTTGGCCAAACAAATAAGGTCATGATTTACAGGCTCATTCACCGAG-CT 1962
|||||||||| |||||||||||||||||||| |||||||| |||||||| |||||| |
Sbjct 2135 GAGCTCATCGACTTGGCCAAACAAATAAGGTGATGATTTATAGGCTCATAAACCGAGGC- 2193
Query 1963 ACGGTGGAAGAGCGGATGGTGGAGATT-ACTAAGAAGAAGATGCTTCTAGAGCATCTCGT 2021
|| | ||||| ||||| || | ||| ||||| ||||| ||| ||||||||||||| ||
Sbjct 2194 ACCATTGAAGAAAGGATGATGCA-ATTGACTAAAAAGAAAATGGTTCTAGAGCATCTTGT 2252
Query 2022 AGTGGGGAATA-TGGAAAACCCACATC-TTCGGCAGGACGTGTTAGATGACATCATCAAA 2079
|| ||||| | | ||||| || | | || ||||| | |||||||||||||||||
Sbjct 2253 TGTTGGGAA-ACTC-AAAACACAAAACATTAATCAGGAAGAGTTAGATGACATCATCAGG 2310
Query 2080 TATGGTTCCAAGGAGCTTTT--CTC-TGAAGAGAATGATGAAGCAGGGAAGTCTGGAAAA 2136
||||| || ||||||||||| || |||||| |||||||||||| ||||||||||||
Sbjct 2311 TATGGATCAAAGGAGCTTTTTGCTAGTGAAGA---TGATGAAGCAGGAAAGTCTGGAAAA 2367
Query 2137 ATCCATTATGATGATGCTGCTATTGA-AAAGTTGCTTGACCGTGATCAT-GTAGATGCTA 2194
|| |||||||||||||| ||||| || ||| |||||||| ||||||| | || || || |
Sbjct 2368 ATTCATTATGATGATGCGGCTATAGACAAA-TTGCTTGATCGTGATC-TCGTGGAGGC-A 2424
Query 2195 -AGGAGGTCTCACTGGATGATGAGGAGGATAATGGTTTTTTAAAGAATTTCAAGGTGGCC 2253
|||| |||||| |||||||||| ||||| ||||| || |||||| ||||||||||||
Sbjct 2425 GAGGAAGTCTCAGTGGATGATGAAGAGGAGAATGGATTCTTAAAGGCTTTCAAGGTGGCT 2484
Query 2254 ACTTTT-AAGTATATAGATGACAATGAGGCTGCAGCATCAGAGG-AGGCACA-AG-CTAT 2309
| |||| || ||||||||||| |||||||| ||||||| ||||| | || | || | |
Sbjct 2485 AATTTTGAA-TATATAGATGAAAATGAGGCAGCAGCATTAGAGGCA--CAGAGAGTCGCT 2541
Query 2310 --TGAAAACAATTCTTCAG-AT--A-----GA-A---CAAGTCATTGGAAAGAGTTGCTA 2355
||||| ||| ||||||| | | || | ||||| ||||| |||||||| ||
Sbjct 2542 GCTGAAAGCAAATCTTCAGCAGGCAATTCTGATAGAGCAAGTTATTGGGAAGAGTTGTTA 2601
Query 2356 AAAGACAAATATGAAG-TGCAACAAGCCGAAGAGCTCAATGCTCTTGGAAAGAGGAAGCG 2414
||||| |||| ||| | |||| || || || ||||| |||||||||||||| |||||| |
Sbjct 2602 AAAGATAAATTTGA-GCTGCACCAGGCTGAGGAGCTTAATGCTCTTGGAAAAAGGAAGAG 2660
Query 2415 AAA-CGGCAAGCAGGTGATGTATGC-T-GAAGAAGATGATCTTGATGGTTTAGAAG-TG- 2469
|| || ||||||| || |||| | | |||||||||||||||| |||||| |||| ||
Sbjct 2661 AAGTCG-CAAGCAGTTG--GTATCCATTGAAGAAGATGATCTTGCTGGTTTGGAAGATGT 2717
Query 2470 -ACCTCTGATG-AGA 2482
| |||||||| |||
Sbjct 2718 GAGCTCTGATGGAGA 2732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 182557505577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5