BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328547
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31805.1 | Symbols: | WRKY family transcription factor | ch... 1249 0.0
AT4G31800.1 | Symbols: WRKY18, ATWRKY18 | WRKY DNA-binding prot... 612 4e-174
> AT4G31805.1 | Symbols: | WRKY family transcription factor |
chr4:15385280-15386982 FORWARD LENGTH=1416
Length=1416
Score = 1249 bits (676), Expect = 0.0
Identities = 781/829 (94%), Gaps = 17/829 (2%)
Strand=Plus/Plus
Query 1000 CGCCTGAACCAGAGTAGAGAGCCGGAGGCTAATACATTTGAATCACAAAGCAGAGAAG-C 1058
|||||||| |||||| |||||||||| ||||||||||||| ||||||||||||| || |
Sbjct 397 CGCCTGAATAAGAGTAAAGAGCCGGAGACTAATACATTTGAGTCACAAAGCAGAG-AGTC 455
Query 1059 ACCTTTGGAAATGGGAATTGGTTCTTTTTTGTTCTATCTTGTTGTTGCAAGTAAAACCGA 1118
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 456 ACCTTTGGAAGTGGGAATTGGTTCTTTTTTGCTCTATCTTGTTGTTGCAAGTAAAACCGA 515
Query 1119 GCTTGATAAGATGACAAACCTGCGAATGCAAATGGAGATGTTTCTTCTTAATGCAAAAGA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GCTTGATAAGATGACAAACCTGCGAATGCAAATGGAGATGTTTCTTCTTAATGCAAAAGA 575
Query 1179 AGAATTACACAAGAAAGAACTACAGGCAAATCCTTCTATGTCTTCAAATGAAGCAAGCGG 1238
| || |||| ||| ||| | | | | | | |||||||||||||||||||||||||
Sbjct 576 ACAACTACAGAAG-AAGGA-T--A--C--A--C--CTATGTCTTCAAATGAAGCAAGCGG 623
Query 1239 CTACCAGTTTTCTCCTCAAGAATTCTCGAATTTGGCGTCATCCATTTTCCAAGAGTCATC 1298
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TTTCCAGTTTTCTCCTCAAGAATTCTCGAATTTGGCGTCATCCATTTTCCAAGAGTCATC 683
Query 1299 GTCGAGTGTTCTTCAAGAGGAGTACACCGAATTCGAGGTCTCAAAACCAGAGGATCATCA 1358
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 684 ATCGAGTGTTCTTCAAGAGGAGTACACCGAATTCGAGGTCTCAGAGCCAGAGGATTATCG 743
Query 1359 TCGAGGAACAGACTGCCACTCAAAACTCCAGGCTGAGGTAGGTAGGTTACCTCTGGATGA 1418
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 744 TCGAGGAACAGACTGCAACTCAAAACTCCAGGCTGAGGTAGGTAGGTTACCTCTGGGTGA 803
Query 1419 AAAAGCAGAGGATAGACATACAAAGCATCAGATTCAGAGACAATGCAAACTTAAAGACAA 1478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AAAAGCAGAGGATAGACAAACAAAGCATCAGATTCAGAGACAATGCAAACTTAAAGACAA 863
Query 1479 TGAGGTCACAAAGAGTCATATACCAGAGATGGTGGTGGTGACTGATGAAAGGTATGGAGT 1538
|||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||
Sbjct 864 TGAGGTCACAAAGAGTCATATACCAGAGATGGTGGT-GT--CAGATGAAAGATATGGAGT 920
Query 1539 CTGTCCGTACGAACTAGAGAAAAAGCTGCATGAACTACTGGAGACAAGGCAACAAGAAGA 1598
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GTGTCCGTACGAACTAGACAAAAAGCTGCATGAACTACTGGAGACAAGGCAACAAGAAGA 980
Query 1599 GTTAGTGAAGCTTGAGACTGCTCTGAATCGTGTTGAACGCAGACTACAAGAGAAAGAAAC 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GTTAGTGAAGCTTGAGACTGCTCTGAATCGTGTTGAACGCAGACTACAAGAGAAAGAAAC 1040
Query 1659 TGAGGTTTCATGGTGGAAAGACGCAGCCCGCCTGCTTGCCCAGCGTGTGCCTGAATCTTC 1718
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1041 CGAGGTTTCATGGTGGAAAGACGCAGCCCGCCTGCTTGCCCAGCGTGTTCCTGAATCTTC 1100
Query 1719 TCAGTCTGGACTAGAATGGTGCAACCCAGACTCTTCCACATGTTCAGAACGATCTGTTCC 1778
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1101 TCGGTCTGGACTAGAATGGTGCAACCCAGACTCTTCCACATGTTCAGAGCGATCTGTTCC 1160
Query 1779 AAGATCTTATAAAGCATGTTCGAAACACCGCACCAGTTTTTCTAGATGA 1827
|||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1161 AAGATCTTATGAAGCATGTTCGATACACCGCACCAGTTTTTCTAGATGA 1209
> AT4G31800.1 | Symbols: WRKY18, ATWRKY18 | WRKY DNA-binding protein
18 | chr4:15383201-15385029 FORWARD LENGTH=1245
Length=1245
Score = 612 bits (331), Expect = 4e-174
Identities = 375/395 (95%), Gaps = 8/395 (2%)
Strand=Plus/Plus
Query 492 GACAGTAAAAGATGGATTTCAGTGGAGGAAATACGGACAAAAGGTTACAAGAGACAACCC 551
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 614 GACAGTTAAAGATGGATTTCAATGGAGGAAATACGGACAAAAGGTTACAAGAGACAACCC 673
Query 552 GTCACCTAGAGCTTACTTTAGATGCTCGTTTGCACCGTCTTGTCCAGTAAAAAAGAAGGT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GTCACCTAGAGCTTACTTTAGATGCTCGTTTGCACCGTCTTGTCCAGTAAAAAAGAAGGT 733
Query 612 ACAACGCAGCGCAGAGGATCCATCGTTACTGGTAGCAACATACGAAGGAACGCATAACCA 671
|||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 734 ACAACGCAGCGCAGAGGATCCATCTTTACTTGTAGCGACATACGAAGGGACGCATAACCA 793
Query 672 CTTGGGTCCAAACGCTTCTGAAGGGGATGCTACAAGCCAGGGTGGGTCAAGCACAGTGAC 731
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CTTGGGTCCAAATGCTTCTGAAGGGGATGCTACAAGCCAGGGTGGGTCAAGCACAGTGAC 853
Query 732 TTTGGATCTGGTTCATGG-TGGTCATAGCTTATTAGCTTTGGAGAAGAACGAAAGG-A-A 788
||||||||||||| |||| || |||||| | |||| |||||||| ||||||||| | |
Sbjct 854 TTTGGATCTGGTTAATGGCTG-TCATAG---ACTAGCGTTGGAGAAAAACGAAAGGGATA 909
Query 789 -TACGATGCAAGAGGTTCTGATTCAACAAATGGCGTCATCGTTAACAAAAGATTCAAAAT 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 910 ATACGATGCAAGAGGTTCTGATTCAACAAATGGCGTCATCGTTAACAAAAGATTCGAAAT 969
Query 848 TTACAGCTGCTCTTGCTGCTGCTATATCTGGGAGG 882
|||||||||||||||||||||||||||||||||||
Sbjct 970 TTACAGCTGCTCTTGCTGCTGCTATATCTGGGAGG 1004
Score = 590 bits (319), Expect = 2e-167
Identities = 414/456 (91%), Gaps = 21/456 (5%)
Strand=Plus/Plus
Query 26 TTCCGAAGAAGGAAGTCTCGGTTTCGGCTTCTACCCATTTAAAAAGGAAATGGCTGGAGC 85
||||||||||||| ||||| |||| ||||||||| || ||||| ||||||||| ||||||
Sbjct 160 TTCCGAAGAAGGAGGTCTCAGTTTTGGCTTCTACTCACTTAAAGAGGAAATGGTTGGAGC 219
Query 86 AAGACGAGAGCGCAAGTGAGTTACGAGAGGAGCTAAACAGAGTCAATTCAGAGAACAAGA 145
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 220 AAGACGAGAGCGCAAGTGAGTTACGAGAGGAGCTAAACAGAGTTAATTCAGAGAACAAGA 279
Query 146 AGCTATCAGAGATGTTAGCCAGAGTCTGTGAGAGCTACAACGCACTACATAATCATTTGG 205
||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 280 AGCTAACAGAGATGTTAGCTAGAGTCTGTGAGAGCTACAACGAACTACATAATCATTTGG 339
Query 206 AGAAGCTTCAGAG-C-CC-------TGAAATCGATCAGACCGACAAACTGATAAAGAAAA 256
||||||||||||| | || ||||||||| |||||||| | || |||||||||||
Sbjct 340 AGAAGCTTCAGAGTCGCCAGAGCCCTGAAATCGAGCAGACCGATATACCGATAAAGAAAA 399
Query 257 GGAAACAAGACCCGGATGACTTCTTAGGCTTTCCTATTGGACTCAGTAGTGGAAAAACTG 316
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAAAACAAGACCCGGATGAGTTCTTAGGCTTTCCTATTGGACTCAGTAGTGGAAAAACTG 459
Query 317 AGAACAGCTCTAGCAATGAAGATCATCA------------GCAACATGAGCAGAAAAATC 364
|||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 460 AGAACAGCTCCAGCAACGAAGATCATCATCATCATCATCAGCAACATGAGCAGAAAAATC 519
Query 365 AGCTTCTTTCATGTAAAAGACCAGTCACTGATAGCTTCAACAAAGCAAAGGTTTCGACAG 424
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 520 AGCTTCTTTCATGTAAAAGACCAGTCACTGATAGCTTCAACAAAGCAAAAGTTTCGACTG 579
Query 425 TCTACGTGCCTACTGAAACATCGGACACAAGCTTGA 460
||||||||||||||||||||||||||||||||||||
Sbjct 580 TCTACGTGCCTACTGAAACATCGGACACAAGCTTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5