BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328551
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31760.1 | Symbols: | Peroxidase superfamily protein | chr4... 1459 0.0
> AT4G31760.1 | Symbols: | Peroxidase superfamily protein | chr4:15368032-15369724
REVERSE LENGTH=1065
Length=1065
Score = 1459 bits (790), Expect = 0.0
Identities = 896/948 (95%), Gaps = 4/948 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCCTCTTACA-AACTAAACTATTCCTCTATTCTTCATCTCCTTCTGTTTCTTTC 59
|||||||||||||||| || |||||| |||| || |||||||||||||| ||||||| ||
Sbjct 1 ATGGCGTCCTCTTACAGAA-TAAACTGTTCCACTCTTCTTCATCTCCTTATGTTTCTGTC 59
Query 60 TAGTCTTCTCACTTCCTCCGCCAACCTCTCATTTAATTTCTACGCCGGTTCTTGTTCTGT 119
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 60 TAGTCTTCTCACTTCCTCCGCCAACCTCTCCTTTAATTTCTATGCTAGTTCTTGTTCTGT 119
Query 120 AGCCGAGTTTCTAGTCAGAAACACCGTTAGATCAGCTACCTCCTCCGATCCAACGATCCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCCGAGTTTCTAGTCAGAAACACCGTTAGATCAGCTACCTCCTCCGATCCAACGATCCC 179
Query 180 GGGGAAACTCGTCCGTCTCCTCTTCCACGACTGTTTCGTCCAGGGTTGTGATGCGTCAGT 239
||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CGGGAAACTCCTTCGTCTTTTCTTCCACGACTGTTTCGTCCAGGGTTGTGATGCATCAGT 239
Query 240 GTTGATACAAGGGAATGGCACAGAGAGAAGTGATCCCGGAAATGCCTCTCTTGGAGGATT 299
|||||||||||||||| ||||||||| ||| ||||||||||| || ||||||||||||||
Sbjct 240 GTTGATACAAGGGAATAGCACAGAGAAAAGCGATCCCGGAAACGCATCTCTTGGAGGATT 299
Query 300 CTCAGTCATAGACACAGCCAAGAACGCCATCGAGATTTTATGTCCGGACACTGTTTCCTG 359
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||
Sbjct 300 CTCAGTCATAGACACAGCCAAGAATGCCATCGAGAATTTATGTCCGGCCACTGTTTCTTG 359
Query 360 CGCTGACATAGTCGCACTTGCTGCTAGAGACGCCGTCGAAGCTGCAGGAGGACCGGTGGT 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGCTGACATAGTTGCACTTGCTGCTAGAGACGCCGTCGAAGCTGCAGGAGGACCGGTGGT 419
Query 420 TAAGATTCCGACAGGGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTAAGACCGAA 479
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TGAGATTCCGACAGGGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTGAGACCGAA 479
Query 480 CATCATCGACACAGATTTCACTCTCGATCAAATGATCGATGCCTTCTCTTCTAAAGGCTT 539
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CATCATCGACACAGATTTTACTCTCGATCAAATGATCGATGCCTTCTCTTCCAAAGGCTT 539
Query 540 GTCCATTCAAGATCTCGTTGTCCTCTCTGGAGCACACACGATTGGAGCATCACACTGTAA 599
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 540 GTCCATTCAAGATCTCGTCGTCCTCTCAGGAGCACACACAATTGGAGCATCACACTGTAA 599
Query 600 CGCATTCAATGGAAGGTTTCAACGAGACTCGAAAGGAAACTTCGAGCTAATCGACGCGTC 659
|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 600 CGCATTCAATGGAAGGTTTCAACGAGACTCGAAAGGAAACTTCGAGGTAATTGATGCGTC 659
Query 660 TCTCGACAACTCCTACGCAGAGACACTAATGAACAAATGTTCGTCCTCGGAATCCTCGTC 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 660 TCTCGACAACTCCTACGCAGAGACACTAATGAACAAGTGTTCGTCCTCGGAATCCTCATC 719
Query 720 ATTGACAGTGAGCAACGATCCAGAGACATCTTCCATATTCGATAATCAGTACTATAGGAA 779
|||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 720 ATTGACTGTGAGCAACGATCCAGAGACATCTGCCGTATTCGATAATCAGTACTATAGGAA 779
Query 780 TCTGGAGACTCACAAGGGTTTGTTCCAGACGGATTCTGCTTTGATGGAGGATAATCGGAC 839
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 TCTTGAGACGCACAAGGGTTTGTTTCAGACGGATTCTGCTTTGATGGAGGATAATCGGAC 839
Query 840 GAGGACGATGGTGGGGGAATTAGCGAGTGATGAGGAAAG-TTTTTATCAGAGATGGAGTG 898
|||||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 840 GAGGACAATGGTGGAGGAATTAGCGAGTGATGAGGAAAGCTTTTT-TCAAAGATGGAGTG 898
Query 899 AGTCGTTTGTGAGACTGAGTATGGTTGGTGTGAAAGTTGGTGAAGATG 946
|||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 899 AGTCGTTTGTGAAACTGAGTATGGTTGGTGTGAGAGTTGGTGAAGATG 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5