BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328561
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31660.1 | Symbols: | AP2/B3-like transcriptional factor fa... 551 6e-156
AT4G31650.1 | Symbols: | Transcriptional factor B3 family prot... 279 3e-74
> AT4G31660.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr4:15334013-15335630 FORWARD LENGTH=1173
Length=1173
Score = 551 bits (298), Expect = 6e-156
Identities = 587/717 (82%), Gaps = 58/717 (8%)
Strand=Plus/Plus
Query 1 ATGGCGGATCCAGTTCTTCAATCTACGACATGCCCACATTTCTTCCAGCCTCTTCTTCCC 60
|||||||||||||||||||||||| ||| | | |||||||||||||||| |||||||||
Sbjct 7 ATGGCGGATCCAGTTCTTCAATCTCCGAAAAACTCACATTTCTTCCAGCCACTTCTTCCC 66
Query 61 GGCTTCGACTCCTACCTCAACATTCCTGT-AACCTTCTTCCTC--AA-GCATGTAGAAAG 116
||||||||||| ||||| ||||||||||| || || || ||| || ||| || || |
Sbjct 67 GGCTTCGACTCTTACCTTAACATTCCTGTGAA-GTT-TTTCTCAAAACGCA--TACAAGG 122
Query 117 AAGAAACGAACAAAGGAC--TGCGAACTTGAGATCGGACGCTTCAGATATGACTTGGGAA 174
|||||||||| |||||| || || | | ||| | ||||| || || | |||||| ||
Sbjct 123 AAGAAACGAAGGAAGGACAGTG-GAGC-TAAGAACCGACGCGTCTGAAAAAACTTGGCAA 180
Query 175 GTGAAGATCGATGGCCGGAGTCGGAGACTCACCG-GAGGCTGGAAAGAATTCGTTA-CAG 232
|| |||||| | | |||||||||| || | | ||||||||||| |||| | | |
Sbjct 181 GTTAAGATC-----CAAG-GTCGGAGACTAACAGTG-GGCTGGAAAGAGTTCGCCAGC-G 232
Query 233 CACATGATTTTCGTGTCGGCGATATCATTGTTTTCAGACACGAAGGAGATTTGGTGTTTC 292
| |||||||| || || || ||||| || |||||||||||||||||| |||||| ||||
Sbjct 233 CGCATGATTTCCGAGTTGGGGATATTATCGTTTTCAGACACGAAGGATCTTTGGTATTTC 292
Query 293 ATGTCACTGCATTGGGACCCAGTTGCTGTGAGATTCAATATGTACAGTCTTGCAACGACG 352
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 293 ATGTCACTGCATTGGGACCCAGTTGCTGTGAGATTCAATATGTACCGTCTTG---C-A-- 346
Query 353 ATAATCTTGATGATGATCAGGAAGACATAAGAAACTTGCCAATGGAA-CAGAGTC-TTAA 410
|||||| | | | | | | |||| || |||||| | || ||| ||||| | | ||
Sbjct 347 ATAATC---A-G--G---A-G-A-ACATTAGTAACTTGTCGAT-GAAGCAGAG-CATAAA 392
Query 411 AACAGAACTAGAGGCAGAGCCCTCATTAGACGACGACGATGAAGATGATAACATGGGAAA 470
||||||||| |||| | ||| | ||||| ||| | ||| | ||||||||||||
Sbjct 393 AACAGAACT------AGAGTCTTCACTCGACGAAGAC-A--AAG-T--TAACATGGGAAA 440
Query 471 GCTTCTGAGAAAGAAACATGTGGAGAAGGA-GATTCCTGAAGCAGAAGCAAAGTCTTTTT 529
| ||| ||||| ||||||||| |||| || |||||||||||||||||| ||||||||||
Sbjct 441 GTTTCCAAGAAAAAAACATGTGAAGAA-GAGGATTCCTGAAGCAGAAGCCAAGTCTTTTT 499
Query 530 CATCAGACAAGTCTTGTTTCGTTGCACATGTTACAGATTCTAACCTACGAAACGATACAC 589
||||||||||||| ||||||||||||||||| |||||||||||| ||||| | |||||||
Sbjct 500 CATCAGACAAGTCCTGTTTCGTTGCACATGTAACAGATTCTAACTTACGAGAGGATACAC 559
Query 590 TGTTTCTTCCAACAAAATTTGTTAGGTCCGATGGTCTGATTAAAGGAAGTAACAAGATTG 649
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGTTTCTTCCAAGGAAGTTTGATAGGTCCGATGGTCTGATTAAAGGAAGTAACAAGATTG 619
Query 650 TTCTAATGAATGAAGAAATAAGGACATGGACGCTTATTCTGAAGTTTAGGGATTCAA 706
|||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 620 TTCTGATGAATGAAGAAGCAAGGACATGGACGCTTATTCTGAAGTTTAGGAATTCAA 676
Score = 435 bits (235), Expect = 6e-121
Identities = 322/364 (88%), Gaps = 6/364 (2%)
Strand=Plus/Plus
Query 710 TAAAGAGTGTTTCCACTAAAGATAGT-AGCAAAGGGAAGAGAAACGAATCTGGTGACAGT 768
||||||||||||||||||||||| | | |||| |||||||| |||||||||||||||
Sbjct 811 TAAAGAGTGTTTCCACTAAAGAT-TTCAACAAAATAAAGAGAAAGGAATCTGGTGACAGT 869
Query 769 AGACAAAAGGTTCCATCATCGTCATCTTCAGTAAGTGAATACCG-TTTTGTGACACTAAC 827
|| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 870 AGCCAAAAAGTTCCATCATCGTCATCTTCAGTAAGTGAATACCGATTTT-TGACACTAAC 928
Query 828 CGTCAGACCAGCCGTTCTCAAAAATGGTAGACTTCATCTTCCAAGGAAATTCATTGAGGT 887
||||| |||||||| ||||||| |||||||||||| | |||||| ||||||||| |||
Sbjct 929 CGTCACACCAGCCGCTCTCAAAGATGGTAGACTTCGTGTTCCAATCAAATTCATTAAGGG 988
Query 888 TAACCAAATGGAAAATATAGGTATGAAGAAGATAACTTTGTTGGACAAGCATGGAGTAGA 947
||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 989 TAACCGAATGGAAAACCTAGGAATGAAGAAGATAACTCTGTTGGACAAGCATGGAGTAGA 1048
Query 948 GTGGCCAGTGAATTTAGTCATGGAAAAGGGAAATACA-AGGACGCGTTTGGGTTCAGGGT 1006
|||||||||||||||||||||| | |||||||||||| || ||||| || ||||||||||
Sbjct 1049 GTGGCCAGTGAATTTAGTCATGTACAAGGGAAATACACAG-ACGCGATTCGGTTCAGGGT 1107
Query 1007 TGAAAGAATTCTACAATGCTATTGGCGTTAAGGCATACGAATCTTTTGTGTTGGAGTTGG 1066
||||||| || | ||| |||| |||| | |||||| | |||||||||||||||||||||
Sbjct 1108 TGAAAGAGTTTTTCAAGGCTAATGGCATCGAGGCATGCAAATCTTTTGTGTTGGAGTTGG 1167
Query 1067 TTTG 1070
||||
Sbjct 1168 TTTG 1171
> AT4G31650.1 | Symbols: | Transcriptional factor B3 family protein
| chr4:15331140-15333321 FORWARD LENGTH=1482
Length=1482
Score = 279 bits (151), Expect = 3e-74
Identities = 268/323 (83%), Gaps = 14/323 (4%)
Strand=Plus/Plus
Query 810 CCGTTTTGTGACACTAACCGTCAGACCAGCC-GTTCTCAAAAATGGTAGACTTCATC-TT 867
||| ||| |||||||||| |||| |||| || | | || | | |||||| ||| ||
Sbjct 1167 CCGATTTCTGACACTAACTGTCACACCATCCAG-TATCCGCAGTTCCAGACTTTATCTTT 1225
Query 868 CCAAGGAAATTCATTGAG-GTTAACCAA-ATGGAAAATATAGGTA-TGAAGAAGATAACT 924
| || ||| || ||| || ||||| ||| ||||||| ||| | |||||||||||||
Sbjct 1226 CGAA-GAAGTTTATT-AGTGTTAA-CAAGATGGAAAGGGCAGG-AGGGAAGAAGATAACT 1281
Query 925 TTGTTGGACAAGCATGGAGTAGAGTGGCCAGTGAATTTAGTCATGGA-AAAGGGAAATAC 983
| ||||||||| |||||| |||||||||||||| ||| | ||||| ||| || ||||
Sbjct 1282 CTATTGGACAAGAATGGAGAAGAGTGGCCAGTGACCTTACTGATGGATAAA-AGATATAC 1340
Query 984 AAGGACGCG-TTTGGGTTCAGGGTTGAAAGAATTCTACAATGCTATTGGCGTTAAGGCAT 1042
||||| | | ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1341 AAGGATG-GTTTTGGGTTCAGGGTTGAGAGAATTCTGCAATGCTATTGGCGTTAAGGCAT 1399
Query 1043 ACGAATCTTTTGTGTTGGAGTTGGTTTGGGAAGACAAAACAACTCTTCCTATGTTCAAAT 1102
| |||||| | ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1400 ATGAATCTGTGGTGTTGGAGTTGGTTTGGGAAGAGACAACAACTCTTCCTATGTTCAAAT 1459
Query 1103 TCTGCTCCAAGACCAAGACTTGA 1125
|||||||||||| ||||||||||
Sbjct 1460 TCTGCTCCAAGATCAAGACTTGA 1482
Score = 174 bits (94), Expect = 1e-42
Identities = 106/112 (95%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 594 TCTTCCAACAAAATTTGTTAGGTCCGATGGTCTGATTAAAGGAAGTAACAAGATTGTTCT 653
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCTTCCAAGGAATTTTGTTAGGTCCGATGGTCTGATTAAAGGAAGTAACAAGATTGTTCT 950
Query 654 AATGAATGAAGAAATAAGGACATGGACGCTTATTCTGAAGTTTAGGGATTCA 705
||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 951 AATGAATGAAGGAGCAAGGACATGGACGCTTATTCTGAAGTTTAGGGATTCA 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5