BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328571
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31520.1 | Symbols: | SDA1 family protein | chr4:15278281-1... 2180 0.0
AT1G13160.1 | Symbols: | ARM repeat superfamily protein | chr1... 702 0.0
> AT4G31520.1 | Symbols: | SDA1 family protein | chr4:15278281-15281739
REVERSE LENGTH=2097
Length=2097
Score = 2180 bits (1180), Expect = 0.0
Identities = 1329/1396 (95%), Gaps = 30/1396 (2%)
Strand=Plus/Plus
Query 825 TGACAAGAGCAGTGGGGAAACTAATGACAAGAGCAGTGGGGAAACTAATGACAAGAGCAG 884
|||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 TGACGAGAGCACTGTGGAAACTAATGACAAGAGCAGTGGGGAAACTGATGACAAGAGCAC 779
Query 885 TGGGGAAACTAATGAACGGC-CTGAGACCAGGTTGATGATTATAAAAGTTATTGCACGAA 943
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGGGAAACTTATGAACGGCGC-GAGACCAGGTTGATGATTATAAAAGTTATTGCACGAA 838
Query 944 CTATTAGTCTTCACAAGTTGCTTTTATTCAAATTTTATACTTATCTTCAAGAC-TATGCT 1002
| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 839 CAATTGGTCTTCACAAGTTGCTTTTATTCAAATTTTATACTTATCTTCAAG-CGTATGCT 897
Query 1003 AAGGATGGTGTAAAGGACATTACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGAT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGGATGGTGTAAAGGACATTACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGAT 957
Query 1063 GGGGTACCTTCGGATGCCGTGGAGCCACTGTTCAAGAAAATAGTGAATGAGTTTTTACAC 1122
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 958 GGGGTACCTTCGGATGCCGTGGAGCCACTGTTCAAGCAAATAGTGAATAAGTTTTTACAC 1017
Query 1123 GATCGCTCAAGTCCGGAGGCTATTCCTGTCGCACTCAATGTGGTACGAGAAATGTGCCTT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1018 GATCGCTCAAGTCCGGAGGCTATTCCTGTCGCACTCAATGTGGTACGAGAAATGTTCCTT 1077
Query 1183 AGGATTCCCGAGTTGATGACAGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGAT 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGGATTCCCGAGTTGATGACAGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGAT 1137
Query 1243 AAAAAGTACCGTACCCATAGAAAAGCCATCTCAGCAGCATCTGCTTCCCTCATAGCATTG 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAAAAGTACCGTACCCATAGAAAAGCCATCTCAGCAGCATCTGCTTCCCTCATAGCATTG 1197
Query 1303 TTCAGAGAGATCAACCCTTTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCAC 1362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 TTCAGAGAGATCAACCCTTTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCCC 1257
Query 1363 ATTGCCAGACCTAAAAAGTATGGAGAAATCAATGTCTTCAGTAATGTTCCCAATGTTGAG 1422
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1258 ATTGCCAGACCTAAAAAGTATGGAGAAGTCAATGTCTTCAGCAATGTTCCCAATGTTGAT 1317
Query 1423 TTATTGCAAGAAAGTGATGATGATGAAGTGGCGTTGCCTGGGACTGATGATATCGGACAG 1482
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1318 TTATTGCAAGAAAGTGATGATGATGAAGTGGCGTTGCCTGGGAGTGATGATATCGAACAG 1377
Query 1483 GAGCTGATAACTGAGGACGAGGCTGAAGAAGATTCTAATGATGAAGATTCTAATGATGGT 1542
||||||||||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 1378 GAGCTGATAACTGAGGACGAGGCTGAAGAAGATTCTAATGATG--G-TG--A-TGAT--- 1428
Query 1543 GATGATATGCATAGCACTGAA-ATTGATACTTTGGTCAGTGGGGATGAAGAG-AA----- 1595
|||| || | | ||||||| || ||||||||||| ||||| ||||||||| ||
Sbjct 1429 -ATGA-AT--A-A-CACTGAAGAT-GATACTTTGGTTAGTGGAGATGAAGAGGAAGAGAA 1481
Query 1596 ---TGACAGTGATGAAGCCGAGACTGATTGGGAAAACGAAGAAGATGATGGAGAAGCTTC 1652
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1482 GAATGACAGTGATGAAGCCGAGACTGATTGGGAAAACGAAGAAGATGAAGGAGAAGCTTC 1541
Query 1653 TGTGGAGGGTAGTGGAAACAGAGAGAAAGCAGAGGGGAAGAAAAGGAAGTTAGTAGATTT 1712
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1542 TGTGGAGGGTAGTGGAAACAGAGAGAAAGCAAAGGGGAAGAAAAGGAAGTTAGTAGATTT 1601
Query 1713 TGATGCGAGTTTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATGCGCAGAAGC 1772
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1602 TGATGCGAGTCTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATGCGCAGAGGC 1661
Query 1773 AAAGAGGGAACAGCCATCTTTTGCAGAAAGAGATGGCATACTTTCCAATGAGGACTTCCA 1832
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AGAGAGGGAACAGACATCTTTTGCAGAAAGAGATGGCATACTTTCCAATGAGGACTTCCG 1721
Query 1833 AAAAATCAAAGAACTTAAGGCAAAGAAGGATGCGAAAATTGCATTGGCTCGAAAAGGATT 1892
||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1722 AAAAATCAAAGAAGTTAAGGGAAAGAAGGATGCGAAACTTGCATTGGCTCGAAAAGGATT 1781
Query 1893 CAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCCAAACTTGAAGC 1952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 GAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCCAAACTTGAAGC 1841
Query 1953 TCACATAAGGCATAAACTAACAAAAGAAGAAAGGCTGGAGTTAGTTAAAGCGGGTAGGGA 2012
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1842 TCACATAAGGCAGAAACTAATAAAAGAAGAAAGGCTGGAGTTAGTTAAAGCGGGTAGGGA 1901
Query 2013 GGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACCGGAGGATCGAG 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 GGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACCGGAGGATCGAG 1961
Query 2073 CAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCATTAAGATCAAAGGCTGG 2132
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1962 CAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCAGTAAGATCAAAGGCTGG 2021
Query 2133 GAAATCAAAGCGAGTCAAGAAAAAGAAGAATAGCCTCAGCGGAAGCCAGTTCAGAGGAAG 2192
|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2022 GAAAGCAAAGCGAGTCAAGAAAATGAAGAATAGCCACAGCGGAAGCCAGTTCAGAGGAAG 2081
Query 2193 GAAAGCTTGGAAGTGA 2208
||||||||||||||||
Sbjct 2082 GAAAGCTTGGAAGTGA 2097
Score = 926 bits (501), Expect = 0.0
Identities = 515/522 (99%), Gaps = 0/522 (0%)
Strand=Plus/Plus
Query 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
Query 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTATCAAGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTACCAAGTT 120
Query 121 GCGCAATCTCTGATTCTTCTTATGTATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGCT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GCGCAATCTCTGATTCTTCTTATGAATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGCT 180
Query 181 CTGTTTCTAGATATTCAGACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTCTCAC 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGTTTCTAGATATTCAAACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTCTCAT 240
Query 241 ATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCCAAGGCACAAATCTCTTCAGAAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCCAAGGCACAAATCTCTTCACAAG 300
Query 301 ATTGTTTTCGCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTTACC 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGTTTTCTCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTTACC 360
Query 361 CTTTGTGAGCTTCACAAGAGAAAAGTCTGGTTTGGTGATAAACATGACAGAGTAGCAATT 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTTGTGAGCTTCACAAGAAAAAAGTCTGGTTTGGTGATAAACATGACAGAGTAGCAATT 420
Query 421 GCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCGGTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCGGTTT 480
Query 481 CTTCTTGACTACGACAACATTAACGATGAGGATGATAGTGAT 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTCTTGACTACGACAACATTAACGATGAGGATGATAGTGAT 522
Score = 409 bits (221), Expect = 7e-113
Identities = 261/279 (94%), Gaps = 7/279 (3%)
Strand=Plus/Plus
Query 555 AGT-ATCTCAGGTTGTGTTTAACAGAGAGGCTGTTT---A-CAAGAAGAAAAAGCAAGCA 609
||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 517 AGTGATCTCAGGTTGTGTTTAACAGAGAGGCTGTTTACAAGCAAGAAGAAAAAGCAAGCA 576
Query 610 AAACTGCAACGCGCCATGCGAAGTATTAAACGAAAGCAGCGTGCGTCGTCTGAGAACACT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AAACTGCAACGCGCCATGCGAAGTATTAAACGAAAGCAGCGTGCGTCGTCTGAGAACACT 636
Query 670 ACTTCAACTTATTCACCTCTTAATCATCTAAATGATGCACAGAACTTTGCAAAGAGGTTG 729
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 637 ACTTCAACTTATTCACCTCTTAATCATCTAAATGATGCACAGAATTTTGCAGAGAGGTTG 696
Query 730 CTTTGCCGTATTAGGCCTAAGTCTGACAAGAGCAGTG-GGAAAACTAATGACAAGAGCAG 788
||| || ||||||||||||| ||||| |||||| || ||||| ||||||||||||||||
Sbjct 697 CTTCCCCTTATTAGGCCTAAGCCTGACGAGAGCACTGTGGAAA-CTAATGACAAGAGCAG 755
Query 789 TGGGGAAACTAATGACAAGAGCAGTGGGGAAACTAATGA 827
|||||||||| |||||||||||| |||||||||| ||||
Sbjct 756 TGGGGAAACTGATGACAAGAGCACTGGGGAAACTTATGA 794
Score = 69.4 bits (37), Expect = 1e-10
Identities = 43/46 (93%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 801 TGACAAGAGCAGTGGGGAAACTAATGACAAGAGCAGTGGGGAAACT 846
|||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 720 TGACGAGAGCACTGTGGAAACTAATGACAAGAGCAGTGGGGAAACT 765
> AT1G13160.1 | Symbols: | ARM repeat superfamily protein | chr1:4484584-4488577
FORWARD LENGTH=2654
Length=2654
Score = 702 bits (380), Expect = 0.0
Identities = 505/565 (89%), Gaps = 10/565 (2%)
Strand=Plus/Plus
Query 1649 CTTCTGTGGAGGGTAGTGGAAACAGAGAGAAAGC-AGAGGGGAAGAAAAGGAAG-TTAGT 1706
||||||| |||| ||||||||||| ||||||||| | |||| ||||| |||||| || ||
Sbjct 1906 CTTCTGTAGAGGATAGTGGAAACAAAGAGAAAGCTA-AGGGCAAGAAGAGGAAGATT-GT 1963
Query 1707 AGATTTTGATGCGAGT-TTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATGCG 1765
|||||||||||||| | || ||| |||||||||||||||| |||||||| ||||||| ||
Sbjct 1964 AGATTTTGATGCGAATCTT-CTCTCTGCTGATACAAGCCTCCGAGCACTCAAGAGATTCG 2022
Query 1766 CAGAAGCAAAGAGGGAACAGCCATCTTTTGCA-GAAAGAGATGGCATACTTTCCAATGAG 1824
|||||||||||| ||| |||| ||||||| | ||| | |||||||||||||| ||||||
Sbjct 2023 CAGAAGCAAAGAACGAAAAGCCTTCTTTTG-ATGAAGGTGATGGCATACTTTCGAATGAG 2081
Query 1825 GACTTCCAAAAAATCAAAGA-ACTTAAGGCAAAGAAGGATGCGAAAATTGCATTGGCTCG 1883
||||||| |||||||||| | |||| ||||||||||||| || |||||||||||||||||
Sbjct 2082 GACTTCCGAAAAATCAAA-ACACTTCAGGCAAAGAAGGAAGCAAAAATTGCATTGGCTCG 2140
Query 1884 AAAAGGATTCAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCCAA 1943
|||||||||||| |||||| |||||||| ||||||| ||||||| |||| ||||||||||
Sbjct 2141 AAAAGGATTCAAGGTTCCGAATTCTGATCAGCTAAGCAAGAAGCGGGTCGATCCAGCCAA 2200
Query 1944 ACTTGAAGCTCACATAAGGCATAAACTAACAAAAGAAGAAAGGCTGGAGTTAGTTAAAGC 2003
||||||||||||||||||||||||||||||||| ||| |||| ||||| |||||||||||
Sbjct 2201 ACTTGAAGCTCACATAAGGCATAAACTAACAAAGGAACAAAGACTGGAATTAGTTAAAGC 2260
Query 2004 GGGTAGGGAGGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACCGG 2063
||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||
Sbjct 2261 GGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGAAGAAGACTGG 2320
Query 2064 AGGATCGAGCAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCATTAAGATC 2123
|||||| ||||||| ||||||||| |||| ||||||||||||||| |||||| |||||||
Sbjct 2321 AGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTGCAATAAGATC 2380
Query 2124 AAAGGCTGGGAAATCAAAGCGAGTCAAGAAAAAGAAGAATAGCCTCAGCGGAAGCCAGTT 2183
||||||||| |||||||| ||| | ||||| | |||||||||| ||||||||||||||||
Sbjct 2381 AAAGGCTGGTAAATCAAAACGAATTAAGAAGATGAAGAATAGCATCAGCGGAAGCCAGTT 2440
Query 2184 CAGAGGAAGGAAAGCTTGGAAGTGA 2208
||||||||||||||||||||||||
Sbjct 2441 TAGAGGAAGGAAAGCTTGGAAGTGA 2465
Score = 621 bits (336), Expect = 8e-177
Identities = 515/601 (86%), Gaps = 14/601 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
|||||||| ||||| || ||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct 303 ATGTTTCTAGCTCACGTTACTCCCTTTTACCCGAAGCAACTCGCGGCGTTTCCAGCTCAA 362
Query 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTATCA-AGT 119
|| |||| |||||||||||| || ||| | || ||||| ||||||||||| | || | |
Sbjct 363 TTAACTGGTTTACTCCGTACTTCGTGCTTAGCTATGCCCTCGGGGCTTCGAAACCATA-T 421
Query 120 TGCGCAATCTCTGATTCTTCTTATGTATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGC 179
||| ||| ||||||| ||||| ||| ||||||||||||||||||||||||||||| | ||
Sbjct 422 TGCACAAGCTCTGATCCTTCTAATGAATCGAAAGAGTCTTGTCATCGAGGATTTGCTGGC 481
Query 180 TCTGTTTCTAGATATTCAGACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTC-TC 238
| ||||||| |||||||||||||||||||| |||||| ||||||| |||||||| | ||
Sbjct 482 TTTGTTTCTGGATATTCAGACTCTTGGTGACAAAAACCTGCGAAATCTTGCTTT-TGGTC 540
Query 239 ACATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCC-AAGGCACAAATCTCTTCAG 297
|||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||
Sbjct 541 ACATTGTTCAAACCATTCGTAAGATGAGTATCACCGATCCCAAG-CACAAATCACTTCAG 599
Query 298 AAGATTGTTTTCGCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTT 357
|||||||| || ||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 600 AAGATTGTAATCTCTATGTTGGAGCAAGAAGATGAAGCAAAGGCTAAGAGAGCACTTGCT 659
Query 358 ACCCTTTGTGAGCTTCACAAGAGAAAAG-TCTGGTTTGGTGATAAACATGACAGAGTAGC 416
|| || |||| ||| ||||||| ||||| ||||| ||||||||||| |||| ||||| ||
Sbjct 660 ACTCTCTGTGCGCTACACAAGA-AAAAGATCTGGCTTGGTGATAAAAATGAAAGAGTTGC 718
Query 417 AATTGCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCG 476
|||||| ||||||||||||||||||||| ||||||||||||| | ||| || | |||||
Sbjct 719 AATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACCTAGGATTATGATTTCCGCTCTTCG 778
Query 477 GTTTCTTCTTGACTACGACAACATTA-ACGATGAGGATGATAGTGATGCTTCAAGC-AGC 534
|||||||||||| || || ||||| | ||||||| || |||||||||||| |||| |
Sbjct 779 GTTTCTTCTTGATTATGAGAACAT-AGACGATGATGACGATAGTGATGCTGAAAGCGAT- 836
Query 535 GATGACGAGGATTCAAAGAAAGTATCTCAGGTTGTGTTTAA-CAGAGAGGCTGTTTACAA 593
||||||||||| ||||||||| || |||||||||| |||| | || |||||||||||||
Sbjct 837 GATGACGAGGAGTCAAAGAAAATAGATCAGGTTGTGATTAATC-GACAGGCTGTTTACAA 895
Query 594 G 594
|
Sbjct 896 G 896
Score = 472 bits (255), Expect = 9e-132
Identities = 463/558 (83%), Gaps = 35/558 (6%)
Strand=Plus/Plus
Query 906 TGAGACCAGGTTGATGATTATAAAAGTTATTGCACGAACTATTAGTCTTCACAAGTTGCT 965
|||||| ||||||||||| || ||||||||||| || || ||| |||||||||||||||
Sbjct 1103 TGAGACTAGGTTGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCA 1162
Query 966 TTTATTCAAATTT-TATACTTATCTTCAAGACTATGCTAAGGATG-GTGTAAAGGACATT 1023
|||| | || ||| ||| ||| ||||||| |||||||| | | |||||||||||||
Sbjct 1163 TTTACT-AAGTTTCTATCCTTTTCTTCAAAACTATGCT-CTGCCGCATGTAAAGGACATT 1220
Query 1024 ACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGATGGGGTACCTTCGGATGCCGTG 1083
|||||||||||||||||||||||||| ||||||| |||||||| ||||| |||| |||
Sbjct 1221 ACACAAATACTTGCAGCAGCAGTTCAATCTTGCCACGATGGGGTTCCTTCTGATGTTGTG 1280
Query 1084 GAGCCACTGTTCAAGAAAATAGTGAATGAGTTTTTACACGATC--GCTCAAGTCCGGAGG 1141
||||||||||||||| |||| |||||| ||||| ||||||| | | ||| |||| ||||
Sbjct 1281 GAGCCACTGTTCAAGCAAATTGTGAATCAGTTTGTACACGA-CAAG-TCACGTCCTGAGG 1338
Query 1142 CTATTCCTGTCGCACTCAATGTGGTACGAGAAATGTGCCTTAGGATTCCCGAGTTGATGA 1201
||||| |||||| |||||||||||| |||||||||||||| ||| ||| ||| |||||||
Sbjct 1339 CTATTGCTGTCGGACTCAATGTGGTGCGAGAAATGTGCCTGAGGGTTCACGACTTGATGA 1398
Query 1202 CAGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGATAAAAAGTACCGTACCCATA 1261
||||||| || ||||| |||||||||| |||||||| | || || | ||
Sbjct 1399 CAGAAGAGTTACTGCAAGATCTTGCTCTGTATAAAA---A------GT-CC---C--AT- 1442
Query 1262 GAAAA-GCCATCTCAGCAGCATCT-GCTTCCCTCATAGCATTGTTCAGAGAGATCAACCC 1319
||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1443 GAAAAAGCCATCTCAGCAGCAGCACG-TTCCCTCATAGCATTGTTCAGAGAGATCAACCC 1501
Query 1320 TTTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCACA-T-TGCCAGACCTAAA 1377
|| ||| || || |||||||| |||||||||||||||| | || | | | | |||||||
Sbjct 1502 TTCGCTTCTGGTTAAAAAAGATCGTGGCCGTCCTGGAGCT-ACCGTCTTC-ATACCTAAA 1559
Query 1378 AAGTATGGAGAAATC-AATGTCTTCAGTAATGTTCCCAATGTTGAGTTATTGCAAGAAAG 1436
| |||||||| || ||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1560 CATTATGGAGAG-TCTAATGTCTTCAGCAATGTTCCTAATGTTGAATTATTGCAAGAAAG 1618
Query 1437 TGATGATGATGAAGTGGC 1454
|||| |||| || |||||
Sbjct 1619 TGATAATGA-GA-GTGGC 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109537589190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5