BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328572

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13070.1 | Symbols: CYP71B27 | putative cytochrome P450 | ch...   333    1e-90


> AT1G13070.1 | Symbols: CYP71B27 | putative cytochrome P450 | 
chr1:4455477-4457099 FORWARD LENGTH=1623
Length=1623

 Score =  333 bits (180),  Expect = 1e-90
 Identities = 381/474 (80%), Gaps = 30/474 (6%)
 Strand=Plus/Plus

Query  36   GCTTCTTACTTTTGTGTCATTAATCTTTTTCATGACAA-AGGTAAGAGAAACCCTAAATG  94
            |||| ||||| | || |||| |||||||||  | | || || | | | |||| | |||| 
Sbjct  33   GCTTGTTACTCTCGTATCATCAATCTTTTT--T-A-AACAGATCA-A-AAACACAAAATT  86

Query  95   GAATCTTCCTCCGTGCCATCCAAGTCTCCCGATCATCGGAAACTTACACCAAT-TTCGCA  153
             |||||||||||| ||| ||| ||||| ||||| || ||||||||||||| || ||  ||
Sbjct  87   TAATCTTCCTCCGAGCCCTCCTAGTCTTCCGATAATTGGAAACTTACACC-ATCTT-ACA  144

Query  154  GGATTACCTCACCGATGCTT-TCATCATCTCTCCATCAAATACGGACCCGTGGTACTTCT  212
            ||||| |||||| |||| || |||| | ||||||||||||||||| |||||| |||||||
Sbjct  145  GGATTGCCTCACAGATG-TTATCATAAGCTCTCCATCAAATACGGTCCCGTGATACTTCT  203

Query  213  TCATCGCGGGTTTGTTCCAATGGTTGTGATCTCCTCGAGTGAAGCAGCTGAAGAAGAT-C  271
            ||||| ||| ||||||||| | ||||||||||| | ||| ||||||||||||| || | |
Sbjct  204  TCATCTCGGCTTTGTTCCAGTTGTTGTGATCTCATTGAGCGAAGCAGCTGAAGCAG-TAC  262

Query  272  TCAAAACCCATGACCTTGG-ATGTTGCAGCCGACC-AAGAACGGTCGGCACGGGTAAACT  329
            ||||||| |||||  |||| ||||||||||||||| ||| ||||| || || || |||||
Sbjct  263  TCAAAACACATGA-TTTGGAATGTTGCAGCCGACCAAAG-ACGGTGGGGACCGGAAAACT  320

Query  330  CTCCTACGG-----AAGACA-CAGTACCG-GCCCGTACGGCGAGCATTGGCGAGAAATGG  382
            ||| |||||     |||||| ||||   | | || ||| | ||| ||||||| |||||| 
Sbjct  321  CTCTTACGGTTTTAAAGACATCAGTTTTGTG-CCATACAGTGAGTATTGGCGGGAAATGC  379

Query  383  GAAAGCTCGCTTTTATCGAGCTTTTTAGCCTTAAAAAGGTTCAATCTTATAGGAATATCA  442
            |||| |||||  ||| ||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct  380  GAAAACTCGCGGTTACCGAACTTTTTAGCCTTAAAAAGGTTCAATCTTATAGGTATATAA  439

Query  443  GAGAGGAAGAGGTGGAGTTCATGGTGAA-AATAGTGTC-GCAATCGGCTTCGAA  494
            ||| ||||||| | || || |||||||| || | |||| | |||| |||| |||
Sbjct  440  GAGGGGAAGAGATCGAATTTATGGTGAAGAA-ATTGTCAG-AATCAGCTTTGAA  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5