BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328581
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31420.2 | Symbols: | Zinc finger protein 622 | chr4:152458... 1984 0.0
AT2G24500.1 | Symbols: FZF | Zinc finger protein 622 | chr2:104... 233 2e-60
> AT4G31420.2 | Symbols: | Zinc finger protein 622 | chr4:15245816-15247924
REVERSE LENGTH=1550
Length=1550
Score = 1984 bits (1074), Expect = 0.0
Identities = 1172/1220 (96%), Gaps = 4/1220 (0%)
Strand=Plus/Plus
Query 1 ATGCCTGGTTTAACATGTAACGCGTGCAACATGGAGTTCAAGGACGAAGAAGAGCGTAAC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 162 ATGCCTGGTTTAACATGTAACGCGTGTAACATGGAGTTCAAGGACGAAGAAGAACGTAAC 221
Query 61 CTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCTGGAGTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCTGGAGTTCCT 281
Query 121 GGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCTGGAGAAGAATAAA 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 282 GGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCAGGAGAAGAATAAA 341
Query 181 TCAAATGAAGCACCTATGCTTTATACTTGTGGGATCTGTGGTAAAGGTTACAGGAGTTCC 240
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 342 TCAAATGAAGCACCTATGCTTTATACTTGTGCAATCTGTGCTAAAGGTTACAGGAGTTCC 401
Query 241 AAGGCTCATGAGCAGCATCTTCAGTCGCGGAGCCATGTTTTGCGGGTTTCACAAGGGGCA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 402 AAGGCTCATGAGCAGCATCTTCAGTCGCGTAGCCATGTTTTGCGGGTTTCACAAGGGACA 461
Query 301 TCAATCAATGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTCGCCGTGTTCAACAC 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TCAATCAACGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTCGCCGTGTTCAACAC 521
Query 361 AGGGGTTCCATTGATGATGATAGTGATGATGAATGGGTGGAGGTTGATTCTGACGACGAA 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 522 AGGGGTTCCATTGATGATGATAGTGAAGATGAATGGGTGGAGGTTGATTCTGACGAGGAA 581
Query 421 TTGGCTGCTGAAGAAGCCTCTGATTCTTTGTCTAAGTTGAATGTTAATGAGTCTGGATCT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 582 TTGGCTGCTGAAGAAGCCTCTGATTCTTTGTCTAAGTTGAATGTGAATGAGTCTGGATCT 641
Query 481 GCTGAAGATATGGATGATGACGATGATGCAGACAAGTATGAGCTGGATCCAACCTGCTGT 540
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 642 GCTGAAGATATGGATGATGATGGTGATGCAGATAAGTATGAGCTGGATCCAACCTGCTGT 701
Query 541 TTGATGTGTGACAAAACCCATAAGACCTTAGAGAGCTGTATGGTTCACATGCATAAGCAC 600
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 702 TTGATGTGTGACAAAAAACATAAGACCTTAGAGAGCTGTATGCTTCACATGCATAAGCAT 761
Query 601 CATGGTTTCTTCATTCCCGATATTGAGTATCTCAAGGATCCTGAAGGGCTTCTCACTTAC 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CATGGTTTCTTTATTCCCGATATTGAGTATCTCAAGGATCCTGAAGGGCTTCTCACTTAC 821
Query 661 CTCGGTCTCAAGGTCAAGAGAGACTTCATGTGTCTATACTGCAATGAGCTGTGCCGTCCA 720
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 822 CTTGGTCTTAAGGTCAAGAGAGACTTCATGTGTCTGTACTGCAATGAGCTGTGCCGTCCA 881
Query 721 TTCAGCAGCTTAGAAGCTGTAAGAAAGCATATGGAAGCAAAGAGTCATTGCAAACTGCAT 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 882 TTCAGCAGCTTAGAAGCTGTAAGAAAACATATGGAAGCAAAGAGTCATTGCAAACTGCAT 941
Query 781 TATGGTGATGGTGATGATGATGAAGATGCTGAACTAGAAGAGTTCTATGACTACAGCAGC 840
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 942 TATGGTGATGGTGATGATGAAGAAGATGCTGAGCTAGAAGAGTTTTATGACTACAGCAGC 1001
Query 841 AGCAGCTATGTTGATGAAGCTGGGAAGCAGATTGTTGTAGCTGGTGAAACCGACAACACT 900
||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| |||
Sbjct 1002 AGCAGCTATGTTGATGAAGCTGGAAAGCAAATTGTTGTATCTGGTGAAACAGACAATACT 1061
Query 901 GTAGAACTTGTTGGTGGTTCTGAGCTCCTGATCACGGAGAATTCCGAGAACACAAAAACG 960
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||
Sbjct 1062 GTAGAACTCGTTGGTGGTTCTGAGCTCTTGATCACGGAGAAGTCCGAGAACACAACAACG 1121
Query 961 TCTAAAACTCTCGGGTCCCGTGAATTCATGCGTTACTACAGACAGAAGCCTCGCCCAAAT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1122 TCTAAAACTCTCGGGTCCCGTGAATTCATGCGTTACTACAGACAGAAGCCACGCCCAACT 1181
Query 1021 TCTCAAAACAGCAACCAGATAAT-GTCCTCTTTATCTTCAAGGTACAAGAGCCTGGGTCT 1079
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1182 TCTCAAGACAGCAACCAGATAATTG-CCTCTTTATCTTCAAGGTACAAGAGCCTGGGTCT 1240
Query 1080 GAAGACGGTACCCTCAAAAGAGGAGACATTGAGGATGAAAGTGCGCAAGGAGATGAGTCA 1139
|||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1241 GAAGACAGTACCGTCGAAAGAGGAGACTTTGAGGATGAAAGTGCGCAAGGAGATGAG-CA 1299
Query 1140 -GAGAGGTGAGACAATGCGTACCAAGATCGGAGTGAAGAGTAATGTCATAAGAAACTTGC 1198
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AGAGAGGCGAGACAATGCGTACCAAGATCGGAGTGAAGAGTAATGTCATAAGAAACTTGC 1359
Query 1199 CCAATAACGTCCCATATTAG 1218
||||||||||||||||||||
Sbjct 1360 CCAATAACGTCCCATATTAG 1379
> AT2G24500.1 | Symbols: FZF | Zinc finger protein 622 | chr2:10401035-10402934
REVERSE LENGTH=1541
Length=1541
Score = 233 bits (126), Expect = 2e-60
Identities = 273/342 (80%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 7 GGTTTAACATGTAACGCGTGCAACATGGAGTTC-AAGGACGAAGAAGAGC-GTAACCTTC 64
|||||| | ||||| |||| |||| || ||| || ||||| | |||| | || |||
Sbjct 136 GGTTTAGCTTGTAATTCGTGTAACAAAGACTTCGAA-GACGACGCTGAGCAG-AAGTTTC 193
Query 65 ATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAG 124
| ||||||||||| |||||||| |||||||||||||||||| | ||||| ||||||||||
Sbjct 194 ACTACAAATCCGAATGGCACCGTTACAATCTCAAGCGCAAGATAGCTGGTGTTCCTGGAG 253
Query 125 TTACAGAAGC-CTTGTTTGAGGCTAGACAATCTGCTCTTGCTCTGGAGAAGAATAAATCA 183
| ||||| || | | ||||| ||||||||| ||||| | |||| |||||| |||| |
Sbjct 254 TAACAGAGGCAC-TATTTGAAGCTAGACAAGCTGCTATAGCTCAAGAGAAGGTTAAAGCT 312
Query 184 AATGAAGCACCTATGCTTTATACTTGTGGGATCTGTGGTAAAGGTTACAGGAGTTCCAAG 243
||||||||| |||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 313 GTTGAAGCACCGATGCTTTATAGTTGTGGAATCTGTAACAAAGGTTACAGGAGTTCCAAG 372
Query 244 GCTCATGAGCAGCATCTTCAGTCGCGGAGCCATGTTTTGCGGGTTTC-ACAAGGGGCATC 302
|||||||||||||||||| ||||| ||| ||||||||| || ||| || || |
Sbjct 373 GCTCATGAGCAGCATCTTAAGTCGAAGAGTCATGTTTTGAAGGCTTCGACGAG-----T- 426
Query 303 AATCAATGGAGAGGAGGATATAGCGATTATCAGGCAACTTCC 344
| | |||||||||||||| |||||| |||| ||| |||||
Sbjct 427 A--C--TGGAGAGGAGGATAAAGCGATCATCAAGCAGCTTCC 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5