BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328588
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31350.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1895 0.0
> AT4G31350.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:15212498-15215856
FORWARD LENGTH=1664
Length=1664
Score = 1895 bits (1026), Expect = 0.0
Identities = 1098/1133 (97%), Gaps = 4/1133 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGAGTCTCGTCAAAGGCCTCCTTTTAAGGGCCCGAGATGGATTATCACTTTGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATGTCAGAGTCTCGTCAAAGGCCTCCTTTTAAGGGCCCGAGATGGATTATCACTTTGGTT 388
Query 61 GTTCTGGTTACTGTTGTTGTCATCACCGCATTCATATATCCTCCGCGGAATTCTGTGGCT 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 389 GTTCTGGTTACGGTTGTTGTCATTACCGCATTCATATATCCTCCGCGGAATTCTGTGGCT 448
Query 121 TGCTATATGTTTTCTGGTCCTGGATGTCCATTATACCAACAGTTTTTGTTTGTACCGT-C 179
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
Sbjct 449 TGCTATATGTTTTCTGGTCCTGGATGTCCTTTATACCAGCAGTTTTTGTTTGTACC-TAC 507
Query 180 GAGGGAATTGACTGACTCTGAAGCTGCAGCTCAAGTTGTCATGAATGAAATCATGAACCT 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 508 TCGGGAATTGACTGACTCTGAAGCTGCTGCTCAAGTTGTCATGAATGAAATCATGAACCT 567
Query 240 ACCTCAATCTAAGACAGCAAATCCCAAGATAGCCTTT-ATGTTCTTAACACCAGGGACGC 298
|||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||
Sbjct 568 ACCTCAATCTAAGACAGCAAATCCCAAGTTAG-CTTTCATGTTCTTAACTCCAGGGACGC 626
Query 299 TACCTTTTGAGCCTCTGTGGGAAATGTTCTTCCGTGGTCATGAGAACAAATTTTCAGTTT 358
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 627 TGCCTTTTGAGCCTCTCTGGGAAATGTTTTTCCGTGGTCATGAGAACAAATTTTCAGTTT 686
Query 359 ATGTGCACGCGTCAAAGAAAAGTCCTGTACATACAAGCAGCTATTTTGTTGGTCGAGATA 418
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 ATGTGCATGCCTCAAAGAAAAGTCCTGTACATACAAGCAGCTATTTTGTTGGTCGAGATA 746
Query 419 TTCACAGTCACAAGGTTGCTTGGGGTCAGATATCCATGGTTGATGCAGAAAGAAGGCTAT 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 747 TTCACAGTCACAAGGTTGCTTGGGGTCAGATATCAATGGTTGATGCAGAAAGAAGGCTAT 806
Query 479 TAGCTCATGCTCTCGTTGATCCTGATAATCAACACTTTGTGTTACTTTCAGATAGTTGTG 538
|||||||||||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct 807 TAGCTCATGCTCTCGTTGATCCTGATAATCAACACTTTATATTGCTGTCAGATAGTTGTG 866
Query 539 TACCGCTATTCGACTTTAACTATATCTATAATCACTTGATCTTCGCGAATCTCAGCTTCA 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 867 TACCGCTATTCGACTTTAACTATATCTATAACCACTTGATCTTCGCGAATCTCAGCTTCA 926
Query 599 TTGATTGTTTTGAGGATCCTGGACCACATGGATCTGGTCGGTATTCACAACATATGCTGC 658
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 927 TTGATTGTTTTGAGGATCCTGGACCACATGGATCTGGTAGGTATTCACAACATATGCTGC 986
Query 659 CTGAGGTTGAAAAGAAGGATTTTCGGAAGGGCTCACAGTGGTTTTCAATGAAGAGGAGAC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CTGAGGTTGAAAAGAAGGATTTTCGGAAGGGCTCACAGTGGTTTTCAATGAAGAGGAGAC 1046
Query 719 ATGCTATAGTCGTCATGGCGGACAGCCTTTACTACACAAAATTCAAGCTTTATTGTAGGC 778
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1047 ATGCTATAGTCGTCATGGCGGACAGCCTTTACTACACAAAATTCAAGCTTTACTGTAGGC 1106
Query 779 CGAATATGGAAGGACGCAACTGCTATGCGGACGAGCATTATTTCCCAACTCTTTTCAATA 838
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1107 CAAATATGGAAGGACGCAACTGCTATGCGGACGAGCATTATTTTCCAACTCTTTTCAATA 1166
Query 839 TGATTGATCCAGATGGAATAGCAAACTGGTCAGTGACACATGTTGATTGGTCAGAAGGCA 898
||||||||||||||||||||||||||||||| || |||||||| |||||||| || ||||
Sbjct 1167 TGATTGATCCAGATGGAATAGCAAACTGGTCGGTCACACATGTAGATTGGTCCGAGGGCA 1226
Query 899 AATGGCATCCGAAACTGTACAATGCAAGAGACATCACTCCTTACCTCATCAGGAAAATCA 958
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 AATGGCATCCGAAGCTGTACAATGCAAGAGACATCACTCCTTACCTCATCAGGAAAATCA 1286
Query 959 AGTCCATCCAACTTGCTTACCATGTCACAAGCGATTTAAAGAAAGTGACGACAGTAAAGC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 AGTCCATCCAACTTGCTTACCATGTCACAAGCGATTTAAAGAAAGTGACGACAGTAAAGC 1346
Query 1019 CGTGTCTATGGAAAGGAGAGCAACGTCCATGTTACCTATTTGCTCGGAAGTTTAATCCTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CGTGTCTATGGAAAGGAGAGCAACGTCCATGTTACCTATTTGCTCGGAAGTTTAATCCTG 1406
Query 1079 AAACTCTGGACCGATTGATGTATCTCTTCCCTAACTACACCTCGCTGGTTTGA 1131
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AAACTCTAGACCGATTGATGTATCTCTTCCCTAACTACACCTCGCTGGTTTGA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5