BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328593
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31300.2 | Symbols: PBA1 | N-terminal nucleophile aminohydro... 1147 0.0
> AT4G31300.2 | Symbols: PBA1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr4:15188763-15191153
FORWARD LENGTH=1087
Length=1087
Score = 1147 bits (621), Expect = 0.0
Identities = 678/706 (96%), Gaps = 2/706 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTCAATCTCGATGCGCCTCACTCCATGGGAACGACCATCATCGGCGTCACTTAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 165 ATGGATCTCAATCTCGATGCACCTCACTCCATGGGAACGACCATCATCGGCGTCACTTAC 224
Query 61 AATGGAGGTGTCGTCCTCGGGGCCGACTCGCGTACCAGCACCGGGATGTACGTAGCGAAT 120
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 225 AATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGGTATGTACGTAGCGAAT 284
Query 121 CGAGCTTCTGATAAGATCACACAACTCACAGACAATGTCTACGTCTGCCGCTCTGGATCG 180
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 285 CGAGCTTCTGATAAGATTACACAACTGACAGATAATGTCTACGTCTGCCGCTCTGGATCG 344
Query 181 GCTGCTGATTCTCAGGTTGTCTCTGACTACGTCCGCTACTTCCTTCACCAGCATACAATT 240
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 345 GCTGCTGATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACAATT 404
Query 241 CAGC-TCGGACAACCTGCAACTGTAAAGGTTTCTGCCAACCTTATTAGGATGCTCGCATA 299
|||| | |||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 405 CAGCAT-GGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAGGATGCTCGCATA 463
Query 300 TAATAACAAGCAGAACATGCTCCAAACTGGTCTCATCGTTGGAGGATGGGATAAGTATGA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 464 TAATAACAAGCAGAACATGCTCCAAACTGGTCTCATCGTTGGAGGATGGGATAAATATGA 523
Query 360 GGGTGGGAAGATCTACGGGATCCCACTTGGTGGAACTGTAGTCGAGCAACCGTTTGCCAT 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 524 GGGTGGGAAGATCTACGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCAT 583
Query 420 TGGAGGCTCTGGTTCGAGCTATCTTTACGGGTTCTTCGATCAGGCCTGGAAAGAAAACAT 479
|||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 584 TGGAGGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAACAT 643
Query 480 GACCAAAGAAGAAGCCGAGCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GACCAAAGAAGAAGCAGAGCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGA 703
Query 540 TGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAATCAACTCAGAGGGAGTCACGAGAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 704 TGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAATCAACTCAGAGGGAGTGACGAGAAA 763
Query 600 CTTTTACCCTGGCGATAAGTTGCAGCTTTGGCACGAGGAATTGGAGCCCCAAAACTCACT 659
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 764 CTTTTACCCTGGAGATAAGTTGCAGCTTTGGCACGAAGAATTGGAGCCCCAAAACTCACT 823
Query 660 CTTAGACATCCTAAACGCCGCTGGTCCTGAACCAATGGCCATGTGA 705
||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 824 CTTAGACATTCTGAACGCTGCTGGTCCTGAACCAATGGCCATGTGA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5