BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328609
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31115.2 | Symbols: | Protein of unknown function (DUF1997)... 917 0.0
> AT4G31115.2 | Symbols: | Protein of unknown function (DUF1997)
| chr4:15130075-15132035 FORWARD LENGTH=1181
Length=1181
Score = 917 bits (496), Expect = 0.0
Identities = 582/625 (93%), Gaps = 0/625 (0%)
Strand=Plus/Plus
Query 113 TTCATATTGGTAGAAGAACAATGGTGATTTCTAGTTCAAAGAAAGCGAATCTTTCTGCTT 172
|||||| ||| | |||| |||||||||||||||||| ||||||||||||| | |||||||
Sbjct 368 TTCATAGTGGCAAAAGAGCAATGGTGATTTCTAGTTTAAAGAAAGCGAATATCTCTGCTT 427
Query 173 CGAGGAAGCAGAGAATTAAGCTACAGATTGATGGAGAAAAGGAGCTTACTTTTAGTGAGT 232
||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||
Sbjct 428 CGAGGAAGCAGAGAATTAAGCTAGAGATTAATGGAGAAAAGGAGCTGACTTTCAGTGAGT 487
Query 233 TTTTGAAACACCCATCTGGCATGGAGGCCGTAATCAACGCTAAGGCTTTGCAGAGTTATC 292
|||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 488 TTTTGAAACACCCATCTGGCATGGAGGCTGTGATCAACGCAAAGGCTTTGCAGAGTTACC 547
Query 293 ATTTAGTTGAGGATACTGATAATACTTACAGATGTACATTGCCAAAAGTTCAGTTAATGA 352
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 548 ATTTAGTTGATGATAGTGATGATACTTACAGATGTACATTGCCAAAAGTTCAGTTAATGA 607
Query 353 GCTTTGAAGTTTCTCCAGTACTGGTTTTAAGGGTCACTCCCACACAGGAAGAATGTACAG 412
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 608 GTTTTGAAGTTTATCCAGTACTGGTTTTAAGGGTCACTCCCACACAGGAAGATTGTACAG 667
Query 413 TTGAGCTGCTTTCCTGCAAGTTGGAGGGGTCAAAGTTGGTGGAGAGCCAAAGTGAAAGGT 472
||||||||||||||||||||||||| || ||| |||| |||||| ||||||||||||||
Sbjct 668 TTGAGCTGCTTTCCTGCAAGTTGGAAGGATCAGAGTTATTGGAGAACCAAAGTGAAAGGT 727
Query 473 TTTCAGCAATTATGACAAACTGTATGACTTGGAACATGGAACATCCAGAGCCATTTTTGG 532
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 728 TTTCAGCAATAATGACAAACTGCATGACTTGGAACATGGAACATCCAGAGCCATTTTTGG 787
Query 533 AAGCTGACGTGAGATTGAATGTCACTCTAGAGATCTCAACACGACCGTTCACTATGCTTC 592
||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 788 AAGTTGACGTGAGATTGAATGTCACTCTAGAGATCTCAACGCGACCGTTCACAATGCTTC 847
Query 593 CAGTATCCGCTGTTGAGGCTCCTGGGAATCTTGTAATGCAGACACTGGTAGATACACTGG 652
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 848 CAGTATCAGCTGTTGAGGCTCCTGGGAATCTAGTAATGCAGACACTGGTCGATACACTGG 907
Query 653 TCCCCCTTCTGCTTCAGCAATTACTTAAAGATTACGACGAATGGGTTCAAAAACAGCAAC 712
| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 908 TTCCCCTTCTGCTTCAGCAATTACTTAAAGATTACGACGAATGGATTAAAAAACAGCAAC 967
Query 713 GAAACACCTTAAATGCTAGTTCTTA 737
| ||| ||||||| || | ||||||
Sbjct 968 GGAACTCCTTAAACGCAACTTCTTA 992
Score = 178 bits (96), Expect = 7e-44
Identities = 103/106 (97%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 1 ATGGATATTGGGATTAGCAACGGATGGAGAACTCCGACA-ACTTCAGAAAGCTCTGGATC 59
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 169 ATGGATATTGGGATTAGAAACGGATGGAGAACTCCGA-AGACTTCAGAAAGCTCTGGATC 227
Query 60 TAATTTCCTGGGTTTGCTTAGATCCTACCCTAACACCATCCCCAGG 105
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TAATTTCCTGGGTTTGCTTAGATCCTACCCTAACACCATCCCCAGG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5