BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328625
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30935.1 | Symbols: WRKY32, ATWRKY32 | WRKY DNA-binding prot... 1947 0.0
AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 | chr4:1504... 1258 0.0
> AT4G30935.1 | Symbols: WRKY32, ATWRKY32 | WRKY DNA-binding protein
32 | chr4:15051814-15054042 REVERSE LENGTH=1637
Length=1637
Score = 1947 bits (1054), Expect = 0.0
Identities = 1280/1385 (92%), Gaps = 32/1385 (2%)
Strand=Plus/Plus
Query 112 ATAGAGAAAAA-ACGACAA-AGAGAATCGTCCATGGAAG-A-A-ACTGGTATCGACGAAG 166
||| ||||||| | ||||| ||||||||||||||||||| | | ||||||||||||||||
Sbjct 103 ATACAGAAAAAGAGGACAAGAGAGAATCGTCCATGGAAGAAGACACTGGTATCGACGAAG 162
Query 167 CTAAGGTATGCACGGTGGAGAAGAGCGAGAAAGTGGAGACGGAGAAGGAGCTGGATAATG 226
||||| || |||||||||||||||||||||||||||| |||||||||| | |
Sbjct 163 CTAAGACATACACGGTGGAGAAGAGCGAGAAAGTGGAGCCGGAGAAGGA-C--------G 213
Query 227 GACTGAGTCAACTCAGAGACGAGGAGGAATCACTTGGTACGTG-TGTGGAAGATTTACAT 285
||||||||||| ||||||||||||| ||||||||||| || | | ||||||||||||||
Sbjct 214 GACTGAGTCAATTCAGAGACGAGGAAAAATCACTTGGTGCG-GATATGGAAGATTTACAT 272
Query 286 GATGAGGCTGTGCCAGAAACCCTAGGCAAGGATCAGGTTCAAGGTGTTCGAGAAAATTCG 345
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GATGAGACTGTGCGAGAAACCCTAGGCAAGGATCAGGTTCAAGGTGTTCGAGAAAATTCC 332
Query 346 TCTGTGGAACCAAATGTTGAAGATGT-TGGAGAAGTGAATGAGACTGATAGCGTCAAGGA 404
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 333 TCTGTGGAACCAAATGTTGAAGATGTAT-TAGAAGTGAATGAGACTGATAGCGTCAAGGA 391
Query 405 AATTGTCGTAAGTGCGATTGTGCCTGTTGATGAAGTGGAAGAGAATCGTCAGGTAGAAAC 464
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 392 AACTGTTGTAAGTGCGATTGTGCCGGTTGATGAAGTGGAAGAGAATCGTCAGGTAGAAAC 451
Query 465 ATCTCCTTCTCTGGCTGCATCGTCTGA-TGTTTTGACGGTGGA-GCCATCTCTATCTTCT 522
|||||||||||||||||||||||| || | || ||| ||| | ||||| |||||||| |
Sbjct 452 ATCTCCTTCTCTGGCTGCATCGTCAGACTCATT-GACAGTG-ACGCCATGTCTATCTT-T 508
Query 523 TCGGATCCTGCAACTGCTTCAGCTGCACAAGGTTTATCACTGGTTTCAGTTCCAACTAAA 582
||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||
Sbjct 509 --GGATCCTGCAACTGCTTCAACCGCACAAGATTTACCACTGGTTTCAGTTCCAACTAAA 566
Query 583 CAAGAGCAAAGATCAGATTCTCGGGTGGTTAACAGATTGTCGGTTACTCCCATTCCTAGG 642
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 567 CAAGAGCAAAGATCAGATTCGCCGGTGGTTAACAGATTGTCGGTTACTCCTGTTCCTAGG 626
Query 643 ACACCGGCTCGTGATGGTTACAATTGGAGAAAATATGGACAGAAGCAGGTTAAGAGTCCC 702
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 627 ACACCGGCTCGTGATGGTTATAATTGGAGAAAATATGGACAGAAGCAGGTTAAGAGTCCC 686
Query 703 AAGGGCTCACGAAGCTACTACAGGTGTACGTATACCGAATGTTGTGCTAAGAAAATTGAA 762
||||||||||| || |||||||||||||| || || |||||||||||||| |||||||||
Sbjct 687 AAGGGCTCACGGAGTTACTACAGGTGTACATACACTGAATGTTGTGCTAAAAAAATTGAA 746
Query 763 TGCTCCAATGATTCAGGCAATGTGGTAGAGATTGTTAACAAAGGTTTGCATAGTCATGAA 822
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 747 TGCTCCAATGATTCAGGCAATGTGGTAGAGATTGTTAACAAAGGTTTACATACTCATGAA 806
Query 823 CCTCCCCGGAAGATTAACTTCTCCCCGAGAGAGACTAGAGTTACAACAGCTATCCAGCCT 882
||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 807 CCTCCCCGGAAGACTAGCTTCTCCCCGAGAGAGATTAGAGTTACAACAGCTATCCGGCCT 866
Query 883 GTTTCAGAGGATGATACAGTAGTAGAAGAGCTAACAATTGTTCCTAGCGGTTCAGATCCG 942
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 867 GTTTCAGAGGATGATACAGTAGTAGAAGAGCTATCAATTGTTCCTAGCGGTTCAGATCCG 926
Query 943 TCTGTTTCTACTAAAGAAAACATATGTGAGTCGCAGACAATCGTTGAACGGAAGAGACAT 1002
|||| ||||||||||||| |||| ||||||||||| ||| ||||||| ||||| |||||
Sbjct 927 TCTGCTTCTACTAAAGAATACATCTGTGAGTCGCAAACACTCGTTGACCGGAAAAGACAC 986
Query 1003 TGTGAGAACGAAGCTGTGGAGGAACCAGAGCCAAAACGAAGGC--AA----GATAACTCA 1056
||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 987 TGTGAGAACGAAGCTGTGGAGGAACCAGAGCCAAAACGAAGACTGAAAAAAGATAACTCA 1046
Query 1057 CAAAGTTCAGATTCTGTCTCCAAACCTGGAAAGAAAAATAAATTCGTCGTACACGCAGCT 1116
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1047 CAGAGTTCAGATTCTGTCTCCAAACCTGGAAAGAAAAACAAATTCGTAGTACACGCAGCT 1106
Query 1117 GGTGATGTTGGGATCTGCGGTGATGGATACAGGTGGCGTAAATACGGGCAGAAAATGGTG 1176
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GGTGATGTTGGTATCTGTGGTGATGGATACAGGTGGCGTAAATACGGGCAGAAAATGGTG 1166
Query 1177 AAAGGAAATCCTCATCCAAGGAACTACTACCGATGTACTTCTGCGGGATGTCCTGTTCGT 1236
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1167 AAAGGAAATCCTCATCCAAGGAACTACTACCGATGCACTTCAGCGGGATGTCCAGTTCGT 1226
Query 1237 AAACACATTGAGACAGCAGTAGAGAACACAACAGCAGTAATAATCACATACAAAGGAGTA 1296
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1227 AAACACATTGAGACAGCAGTCGAGAACACAAAAGCAGTAATAATCACATACAAAGGAGTA 1286
Query 1297 CACAACCACGACATGCCGGTGCCTAAGAAACGCCATGGTCCTCCAAGCTCAATGCTCGTA 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CACAACCACGACATGCCGGTGCCTAAGAAACGCCATGGTCCTCCAAGCTCAATGCTCGTA 1346
Query 1357 GCTGCAGCCGCTCCAACGTCAATGAGAACCAGGCCAGACGATCAGGTGAACATTCCCACT 1416
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1347 GCTGCAGCCGCTCCAACATCAATGAGAACCAGGACAGACGATCAGGTGAACATTCCGACT 1406
Query 1417 TCAAGCCAATGCTCGGTGGGACGAGAAAGTGAGAAGCAGAGCAGTGAAGCATTGGATGTT 1476
|||||||| ||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct 1407 TCAAGCCAGTGCTCGGTGGGGCGAGAAAGTGAGAAGCAGAGTAAAGAAGCATTGGACGTT 1466
Query 1477 GTGTG 1481
| |||
Sbjct 1467 G-GTG 1470
> AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 | chr4:15049824-15051665
REVERSE LENGTH=1194
Length=1194
Score = 1258 bits (681), Expect = 0.0
Identities = 788/839 (94%), Gaps = 10/839 (1%)
Strand=Plus/Plus
Query 1477 GTGTGTTCGTGCTCTCCGATGGCGAGTCTTCGATGCTTTCGTGAGCTGAGCCGCCGCGCT 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 GTGTGTTCGTGCTCTCCGATGGCGAGTCTTCGATGCTTTCGTGAGCTGAGCCGCCGCGCT 77
Query 1537 ACGACGGTTTACTCCATCATCCAGACGCGTTCGATCTCTTCATTTCCTGGGATCGAGCTT 1596
||||| |||| |||||||| ||||||||| |||||||||||||||| |||||| ||| ||
Sbjct 78 ACGACTGTTTTCTCCATCAACCAGACGCGATCGATCTCTTCATTTCATGGGATTGAGTTT 137
Query 1597 TCCGGGACAAGCATTTCTCATGGGACTGTAATTCCGAATCGATCTCTCACTAGGAATTTG 1656
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 138 TCCGGGACCAGCATTTCTCATGGGACCGTAATTCCGAATCGATCTCTCACTAGGAATTTG 197
Query 1657 CCGTGGTACAGTCTTTGGTATCGCTCTCAAGATCGTTGTTTCTCTTCGAATACAAAAGAT 1716
|| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 198 CCATGGTACAGTCATTGGTATCGCTCTCAAGATCGTTGTTTCTCTTCGAACACAAAGGAT 257
Query 1717 ACtgatgaagctgaagaaagcagtgaaggagaggatgaggatgatgatgatgaggagggg 1776
|||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 258 ACTGATGAAGATGAAGAAAGCAGTGAAGGAGAGGAT---GATGATGA-G--GAGGAGGGG 311
Query 1777 gaggactttgaggattcggcggagatggaAGTAGAAAGGGAATATTCACCGGCGGAGAAA 1836
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 312 GAAGACTTTGAGGATTCGGCGGATATGGAAGTAGAAAGGGAATATTCACCGGCGGAGAAA 371
Query 1837 GTGGAGGAGGCGGCTGAGATAGGGTACAAAGTTATGGGTCCTCTTAAACCTTCGGAGAGA 1896
||||| ||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 372 GTGGAAGAGGCGGAGGAGATAGGGTACAAGGTGATGGGTCCTCTTAAACCTTCGGAGAGA 431
Query 1897 CTTTTCAAACCCTATGAACCAGTGTTTGCCATTGTTCAGATTGGTTCGCATCAGTTTAAA 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CTTTTCAAACCCTATGAACCAGTGTTTGCCATTGTTCAGATTGGTTCGCATCAGTTTAAA 491
Query 1957 GTAAGCAATGGGGACTCCATTTTCACAGAGAAGTTGAAATTCTGTGACATAAATGATAAG 2016
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 492 GTTAGCAATGGGGACTCCATTTTCACCGAGAAGTTGAAATTCTGTGACATCAATGATAAG 551
Query 2017 TTGGCACTGACCAAGGTTCTTCTATTGGGCTCGGAAAGTCAGACGATTATTGGTAGACCT 2076
|||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |||
Sbjct 552 TTGGAACTAACCAAGGTTCTTCTATTGGGCTCGGCAAGCCAGACGATTATTGGTAGGCCT 611
Query 2077 ATCTTGCCAGATGCGACTGTTCATGCTGTAGTTGAAGAGCATGCATTGGATGAAAAAGTG 2136
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 612 ATTTTGCCAGATGCGACAGTTCATGCTGTAGTTGAAGAGCATGCTTTGGATGAAAAAGTG 671
Query 2137 CTTATTTTCAAAAAGAAACGAAGAAAGAATTATAGGAGAACGAGAGGACATCGTCAGGAA 2196
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 672 CTCATTTTCAAAAAGAAACGAAGAAAGAATTATAGGAGAACGAGAGGACATCGACAGGAA 731
Query 2197 TTGACGAAGTTGAGAATAACGGATATACAAGGAATTGATAAACCAGAACCAAAGATCATC 2256
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||
Sbjct 732 TTGACGAAGTTGAGAATAACCGATATACAAGGAATTGAAAAACCAGAACCGAAGATCGTC 791
Query 2257 CCTAAGCCTTCCAAGGAATG-TGTTACAGAACA-ATCGAAGGCTGAGCTAGTTGCTTAG 2313
| ||||||||| || ||| | |||||||||||| | |||||||||||||||||||||||
Sbjct 792 CATAAGCCTTCGAAAGAA-GCTGTTACAGAACAGA-CGAAGGCTGAGCTAGTTGCTTAG 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114808646415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5