BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328649
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30662.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 464 5e-130
AT4G30670.1 | Symbols: | Putative membrane lipoprotein | chr4:... 385 4e-106
> AT4G30662.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:14955909-14956790
REVERSE LENGTH=882
Length=882
Score = 464 bits (251), Expect = 5e-130
Identities = 314/343 (92%), Gaps = 9/343 (3%)
Strand=Plus/Plus
Query 408 GACTTCACTGGCTTTTTCTTGTTCATTGATTGTATTCCTATTGTTACTCTCTCAGCCTTT 467
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 266 GACTTCACTGGCATTTTCTTGTTCATTGATTGTACTCCTATTGTTACTCTCTCAGCCTTT 325
Query 468 GCTAATTTCATCTGAAAATCAGGAGAGTGAACGAAGACTTGCACAACACGGTGACTCCAA 527
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GCCAATTTCATCTGAAAATAAGGAGAGTGAACGAAGACTTGCACAACACGGTGACTCCAA 385
Query 528 TCCATTGAATCATCATGACTCTCTTCGAGTTTTCATGAGGAAAGCTCGT---G-T--tg- 580
||| ||| ||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 386 TCCGTTGGATCATCATGACTCTCTTCGAGTTTTCATGAGGAAAGCTCGTTTTGGTGGTGT 445
Query 581 -g-tggtggtagtcgtggtggtggtcgtagtcaccgtcgtgtccctagtagtggtcatgg 638
| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 446 TGGTGGTGGTAGTCGTGGTGGTGGTCGTAGCCACCGTCGTGTCCCCAGTAGTGGTCATGG 505
Query 639 tgCCGGTGGATCATCCGCTACTAGTCGACCTTCTCTCTCGATCGCATTGCTTTTCGGTTC 698
||| |||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||
Sbjct 506 TGCGGGTGGATCATCCGCTACTAGTCGACCTTGTCTCTCGATGGCATTGCGCTACGGTTC 565
Query 699 CACGGTCGCAAACTCAATTCTGTTAACATTCTTGGCCTTCTAA 741
||||||||| | |||||||||||| | ||||| |||||||||
Sbjct 566 CACGGTCGCGAGCTCAATTCTGTTGATGTTCTTCGCCTTCTAA 608
> AT4G30670.1 | Symbols: | Putative membrane lipoprotein | chr4:14957358-14957962
REVERSE LENGTH=605
Length=605
Score = 385 bits (208), Expect = 4e-106
Identities = 258/280 (92%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 1 ATGAGAACTTCTTCTCTTCTTGGTTGGTTTTTGATCATCTCCCTCTTGTTACTTTCTCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATGAGAACTTCTTCTCTTCTTGGTTGGTTTTTGATCATCTCCCTCTTGTTACTTTCTCAA 117
Query 61 TCCCTCATAATTTCATGCGGACGTCATGGATCCAAGATCACTCCTTTGGAACGGGGACTA 120
||||||||||||||||||||||| ||| | | |||||||||||||| |||| ||||
Sbjct 118 TCCCTCATAATTTCATGCGGACGCCAT--A-C---GATCACTCCTTTGGGTCGGGAACTA 171
Query 121 GTTGAACATGAAGAGAACGCGGATGGGTC-TCACGGTCATCACCATGACCATCTTCGAGT 179
|||||||||||||||||| ||| ||||| || |||||||||||| ||||||||||||||
Sbjct 172 GTTGAACATGAAGAGAACAAGGAAGGGTCATC-CGGTCATCACCACGACCATCTTCGAGT 230
Query 180 CTTCGTGAGGAAAAGCAAAAGCAAGA--A-GAAGAAGAAGGACAAATCATCAGCCACTCG 236
|||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 231 CTTCGTGAGGAAAAGCAAAAGCAAGAGCAAGAAGAAGAAGGACAAATCAGCAGCCACTCG 290
Query 237 AACTCTTCTCTCTAACCCTTTTACCTATGTATCTACTGTT 276
||| |||||||||||||| |||||||||||||||||||||
Sbjct 291 AACCCTTCTCTCTAACCCATTTACCTATGTATCTACTGTT 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5