BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328652
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:1... 1363 0.0
> AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:14952670-14953682
FORWARD LENGTH=906
Length=906
Score = 1363 bits (738), Expect = 0.0
Identities = 852/908 (94%), Gaps = 4/908 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTCAACGACGGCGAAAGAAAGGTGGAGATGGGATTGGGACTCTGCCCTGACTGG 60
||||||||||||| ||| ||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 1 ATGGAAGTCAACGGCGGGGAAGGAAAGGTGGAGATGGGATCGGGACTCTACCCTGACTGG 60
Query 61 TCAGAGTTGACTCGGGAATGTCTTCTTGACATCTTCTCACGGCTAAGCCAGGAACAAAGA 120
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGAGTTGACTCGAGAATGTCTTCTTGACATCTTCTCACGGCTAAGCCAGGAACAAAGA 120
Query 121 TGGGTCGGACCTATGCTGGTCAGCAAGAACTGGATGAACACATGCTATGACGCGTCACTC 180
||| | ||||| ||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 121 TGGATTGGACCGATGCTGGTCAGCAAGAACTGGATGAACGCATGCTATGACCCGACACTA 180
Query 181 AACACCATCTTCGATCTCGAAACTCGGTTTCTGTCGTTCACTGAGTCGATCAACTGGTGG 240
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 AACACCATCTTCGACCTCGAAACTCGGTTTCTGTCGTTCCCTGAGTCGATCAACTGGTGG 240
Query 241 ACTCCCGAGTTTGAGGATAAAGTCGATTCCTTTCTCCGATCTGTTGTTGATCGGAGTGAA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACTCCCGAGTTTGAGGATAAAGTCGATTCATTTCTCCGATCTGTTGTTGATCGGAGTGAA 300
Query 301 GGAGGTCTCACAGAGATTCGGATCAGGCATTGTACCGAACGCTCTCTATCTTACGCGGCC 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 GGAGGTCTCACAGAGATTCGGATCAGGCATTGTACAGAACGCTCTCTATCTTACGCCGCC 360
Query 361 GAGAGGTGCCCTAATCTAGAGGTACTTTGGATTAAGAGCTGCCCAAATGTTACAGATGCA 420
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 361 GAGAGGTGCCCTAATCTAGAGGTACTTTGGATAAAGAACTGCCCAAATGTTACAGATGCG 420
Query 421 TCAATGGAGAAGATAGCTATGAACTGTCCAAATCTTAGTGAACTTGATATAAGCTACTCT 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TCAATGGAGAAGATAGCTATGAACTGTCCAAATCTTAGAGAACTTGATATAAGCTACTCT 480
Query 481 TATGGCATAACTCACGAGTCTCTGAAAATGTTGGGGAGGAATTGCCAAAATTTAAAGATT 540
||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 481 TATGGCATAACTCACGAGTCTCTGATAACATTGGGGAGGAGTTGCCAAAATTTAAAGATT 540
Query 541 CTGAAACGGAATTTGTTGCCCCGGCTAGGTCCTAACCTACCTACGATTGTCGTGCCATTA 600
|||||||||||||||||||||||||||||||||| ||| || || || |||| |||| ||
Sbjct 541 CTGAAACGGAATTTGTTGCCCCGGCTAGGTCCTAGCCTGCCAACAATCGTCGCGCCACTA 600
Query 601 GACTATCTGGCTACATTTCCTAGATACGGCAATATAGAGGCTAAGA-TAATTGGGAGATA 659
|||||||||||||||||||||||||| || ||||||||||||| || ||||||||| |||
Sbjct 601 GACTATCTGGCTACATTTCCTAGATATGGGAATATAGAGGCTA-GAATAATTGGGAAATA 659
Query 660 CATGCCAGAGCTCAAGCACTTGGAGTTTCGATACTCCACATTGACTGCTAGAGGTCTTGA 719
|||| || |||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 660 CATGACACAGCTCAAGCATTTGGAGATTCGATACTCCACATTGACTGCTAGAGGACTTGA 719
Query 720 CTCGGTTTGTAAGGGATGTTCGAATCTAGAGTACCTGGACTTATGTGGATGTATATCATT 779
|||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 720 CTCGGTTTGTAAGGGATGTTCGAATCTAGAGTACATGGACTTACGCGGATGTATATCATT 779
Query 780 GACCAGAAGTGATATAACCACATA-TACCTCGAGTTTGAAGAATTTGACGGAGATCATTA 838
||||||||||||||||| ||| || ||| ||| | |||||||||||||||||||||||||
Sbjct 780 GACCAGAAGTGATATAAACAC-TAATACGTCGGGCTTGAAGAATTTGACGGAGATCATTA 838
Query 839 AGCCGGATTTCAATCCTCCGATTGCTATTTTACGTGTTCCAAGACCGGGTAATCCAAGAG 898
|||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 839 AGCCGGATTTCAATCCTCCGATTGCTGTTTTACGCGTTCCAAGACCTGGTAATCCAAGAG 898
Query 899 AGGAATGA 906
||||||||
Sbjct 899 AGGAATGA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5