BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328661
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30550.1 | Symbols: | Class I glutamine amidotransferase-li... 1110 0.0
> AT4G30550.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr4:14925410-14926861 FORWARD LENGTH=1106
Length=1106
Score = 1110 bits (601), Expect = 0.0
Identities = 703/752 (93%), Gaps = 7/752 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGTGGTTGAGCAGAAGAAGAGGTTTGCTTTGTTTTTAGCGACGTGTGATTCAGAG 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ATGGTGGTTATTGAGCAGAAGAAGAGGTTTGCTTTGTTTTTAGCGACGTGTGATTCAGAG 268
Query 61 TTCGTGAAGAAGACTTACGGTGGTTACTTCAATGTCTTCGTTTCGACTTTCGGCGATGAA 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 269 TTCGTGAAGAAGACTTACGGTGGTTACTTCAATGTCTTCGTTTCAACTTTCGGCGAAGAA 328
Query 121 GGTGAGCAATGGGATCTATTCCGAGTCATTGACGG-CGACTTTCCCGACGAAAAGGATTT 179
||||||||||||||||||||||||||||| ||||| | | ||||||||||| || |||||
Sbjct 329 GGTGAGCAATGGGATCTATTCCGAGTCATCGACGGACAA-TTTCCCGACGAGAATGATTT 387
Query 180 AGACAAGTACGACGGTTTCGTTATCAGTGGTAGTCCACATGATGCTTTCGGAGACGTCGA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 388 AGACAAGTACGACGGTTTCGTTATCAGTGGTAGTCCACATGATGCTTTCGGAGACGCCGA 447
Query 240 TTGGATTGTTAAGCTTTGCGAGGTTTGTCAGAAACTTGA-CGACATGAAGAAGAAAGTCC 298
||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |
Sbjct 448 TTGGATTGTTAAGCTTTGCGAAGTTTGTCAGAAACTTGATC-ACATGAAGAAGAAAGTTC 506
Query 299 TCGGCATCTGTTTTGGCCACCAGATAATTACTAGAGTCAAAGGTGGGAAAATAGGAAGGG 358
|||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 507 TCGGCATCTGCTTCGGCCACCAGATAATTACTAGAGTTAAAGGTGGGAAGATAGGAAGAG 566
Query 359 CACTCAAAGGTGCAGATATGGGACTTAGAAGCATAACCATAGCGAAGGACAATGAAAAAC 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 567 CACTCAAAGGTGCAGATATGGGACTTAGAAGCATAACCATAGCGAAAGACAATGAAAAAC 626
Query 419 TACGCCGTTACTTTGGAGACG---AGGTACCGGCATCTTTAGCTATTATAAAATGCCATC 475
|||| ||||||||||||||| |||| || ||||||||||||||||||||||| ||||
Sbjct 627 TACGAGGTTACTTTGGAGACGTTGAGGTCCCAGCATCTTTAGCTATTATAAAATGTCATC 686
Query 476 AGGATGAAGTTTTGGAACTCCCTGAGTCTGCTACATTACTTGCATCTTCTGAGGTTTGCG 535
|||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||| ||
Sbjct 687 AGGATGAAGTGTTGGAACTTCCTGAGTCTGCTACACTACTTGCTTCTTCTGAGGTATGTA 746
Query 536 AGGTTGAGATGTTCTCTATTGGAGATAATTTTTTCTGCATCCAAGGGCATCCCGAGTATA 595
| || ||||||||||||||||||||| |||||||||| || ||||||||||| |||||||
Sbjct 747 ACGTCGAGATGTTCTCTATTGGAGATCATTTTTTCTGTATTCAAGGGCATCCAGAGTATA 806
Query 596 ACAAAGAGATTCTGTTTGAGATCGTCGACCGTGTTTTTAATATGAAACTGATGGAGCAAG 655
|||||||||||||||||||||| || ||||| || |||||||||| |||||||||||||
Sbjct 807 ACAAAGAGATTCTGTTTGAGATTGTGGACCGAGTCCTTAATATGAAGCTGATGGAGCAAG 866
Query 656 AGTTTGCGGATAAGGCAAAGAGCACGATGGAGACTGCGCAACCAGACAGGATTCTATGGC 715
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 867 AGTTTGCGGATAAGGCAAAGAGTACGATGGAGACTGCGCAACCAGACAGGATTCTATGGC 926
Query 716 AGAAGCTCTGCAAAAACTTCCTGAAAGGTTGA 747
||||||||||||||||||||||||||||||||
Sbjct 927 AGAAGCTCTGCAAAAACTTCCTGAAAGGTTGA 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5