BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328673
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14878783-1488... 1147 0.0
> AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14878783-14880331
REVERSE LENGTH=1124
Length=1124
Score = 1147 bits (621), Expect = 0.0
Identities = 757/823 (92%), Gaps = 8/823 (1%)
Strand=Plus/Plus
Query 1 ATGGTACGTTTTAGTAACAGCCTTATAGGAATACTCAACTTCTTCGTCTTCCTCCTCTCG 60
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 60 ATGGTACGTTTTAGTAACAGTCTTGTAGGAATACTCAACTTCTTCGTCTTCCTTCTCTCG 119
Query 61 GTTCCGATTCTCTCAACAGGAATCTGGCTTAGCCTTAACGCCTCGACGCAATGCGAGCGA 120
||||| || |||||||| ||||||||||| |||||||| ||| |||||||||||||| ||
Sbjct 120 GTTCCCATACTCTCAACCGGAATCTGGCTCAGCCTTAAAGCCACGACGCAATGCGAGAGA 179
Query 121 TTTCTCGACAAACCCATAATCGCTCTCGGTGCTTTCCTCATGATAGTCGCAATCGCTGGA 180
|| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 180 TTCCTCGACAAACCCATGATCGCTCTCGGTGTTTTCCTCATGATAATCGCAATCGCTGGA 239
Query 181 GTCGTTGGATCTTGTTGCAGAGTGACGTGGCTTCTCTGGTTCTATCTATTTGTTATGTTC 240
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 240 GTCGTTGGATCTTGTTGCAGAGTGACGTGGCTTCTCTGGTCCTATCTCTTTGTGATGTTC 299
Query 241 TCCTTAATCGTCATAGTCCTCTGTTTCACCATCTTCGCCTTTGTGGTCACTAGTAAAGGC 300
| ||||||| |||| |||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 300 TTCTTAATCCTCATCGTCCTCTGTTTCACCATCTTTGCCTTCGTTGTCACTAGTAAAGGC 359
Query 301 TCCGGTGAAACTATCCCTGGAAAGGCTTATAAGGAGTATAGGCTTGAGACTTACTCTGAT 360
||||| |||||||||| ||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 360 TCCGGCGAAACTATCCAAGGAAAAGCTTATAAGGAGTATAGGCTCGAGGCTTACTCTGAT 419
Query 361 TGGTTGCAGAAGCGTGTGAACAACGCTAAACATTGGAACAACATTAGAAGCTGTCTTTAT 420
|||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 420 TGGTTGCAGAGGCGTGTGAACAACGCTAAGCATTGGAACAGCATTAGAAGCTGTCTTTAT 479
Query 421 GAGAGCAAGTTCTGTTCTAACTTGGAGTTA-TACGCTGCTCGTGAGC-CTGTTTCTGCTT 478
|||||||||||||||| ||||||||||||| | | ||||| | | | ||||||||| ||
Sbjct 480 GAGAGCAAGTTCTGTTATAACTTGGAGTTAGT-CACTGCTAATCA-CACTGTTTCTGATT 537
Query 479 TCTACAAAGAGGATCTCACTCCTCTTGAGTCTGGTTGCTGCAAGCCCTCTAATGACTGTA 538
|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 538 TCTACAAAGAAGATCTCACTGCTTTTGAGTCTGGTTGCTGCAAGCCCTCTAATGACTGTG 597
Query 539 ACTTCATCTACATAAATGCAACAAGTTGGAACAAAACATCAGGAACACA-AAAGAACTCA 597
|||||| |||||||| | |||||| |||||| ||||||||||||||||| ||| ||||||
Sbjct 598 ACTTCACCTACATAACTTCAACAACTTGGAATAAAACATCAGGAACACATAAA-AACTCA 656
Query 598 GATTGCCAACTTTGGGACAACGAAAAGGATAAGCTTTGCTACAATTGCCAAGCATGCAAG 657
||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 657 GATTGCCAACTTTGGGACAACGAAAAGCATAAGCTTTGCTACAATTGCAAAGCCTGCAAG 716
Query 658 GCTGGTTTTCTCGACAACCTCAAGAGCT-CATGGAAAAGAGTTGCTATTGTCAACATCAT 716
|| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 717 GCCGGTTTTCTCGACAACCTCAAG-GCCGCATGGAAAAGAGTTGCTATTGTCAACATCAT 775
Query 717 TTTCCTTGTACTCCTCATTATCGTCTACGCTATGGGATGTTGCGCCTTCCGAAACAACAA 776
|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 776 TTTCCTTGTACTCCTCGTTGTCGTCTACGCTATGGGATGTTGCGCTTTCCGAAACAACAA 835
Query 777 AGAAGATAGTTATGCCCGTTCCAATGGTTTCAACAATCCTTGA 819
||||||||| |||| |||||||||||||||||||||| |||||
Sbjct 836 AGAAGATAGATATGGCCGTTCCAATGGTTTCAACAATTCTTGA 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5