BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg328673 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14878783-1488... 1147 0.0 > AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14878783-14880331 REVERSE LENGTH=1124 Length=1124 Score = 1147 bits (621), Expect = 0.0 Identities = 757/823 (92%), Gaps = 8/823 (1%) Strand=Plus/Plus Query 1 ATGGTACGTTTTAGTAACAGCCTTATAGGAATACTCAACTTCTTCGTCTTCCTCCTCTCG 60 |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| Sbjct 60 ATGGTACGTTTTAGTAACAGTCTTGTAGGAATACTCAACTTCTTCGTCTTCCTTCTCTCG 119 Query 61 GTTCCGATTCTCTCAACAGGAATCTGGCTTAGCCTTAACGCCTCGACGCAATGCGAGCGA 120 ||||| || |||||||| ||||||||||| |||||||| ||| |||||||||||||| || Sbjct 120 GTTCCCATACTCTCAACCGGAATCTGGCTCAGCCTTAAAGCCACGACGCAATGCGAGAGA 179 Query 121 TTTCTCGACAAACCCATAATCGCTCTCGGTGCTTTCCTCATGATAGTCGCAATCGCTGGA 180 || |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| Sbjct 180 TTCCTCGACAAACCCATGATCGCTCTCGGTGTTTTCCTCATGATAATCGCAATCGCTGGA 239 Query 181 GTCGTTGGATCTTGTTGCAGAGTGACGTGGCTTCTCTGGTTCTATCTATTTGTTATGTTC 240 |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 240 GTCGTTGGATCTTGTTGCAGAGTGACGTGGCTTCTCTGGTCCTATCTCTTTGTGATGTTC 299 Query 241 TCCTTAATCGTCATAGTCCTCTGTTTCACCATCTTCGCCTTTGTGGTCACTAGTAAAGGC 300 | ||||||| |||| |||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 300 TTCTTAATCCTCATCGTCCTCTGTTTCACCATCTTTGCCTTCGTTGTCACTAGTAAAGGC 359 Query 301 TCCGGTGAAACTATCCCTGGAAAGGCTTATAAGGAGTATAGGCTTGAGACTTACTCTGAT 360 ||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||||||| Sbjct 360 TCCGGCGAAACTATCCAAGGAAAAGCTTATAAGGAGTATAGGCTCGAGGCTTACTCTGAT 419 Query 361 TGGTTGCAGAAGCGTGTGAACAACGCTAAACATTGGAACAACATTAGAAGCTGTCTTTAT 420 |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 420 TGGTTGCAGAGGCGTGTGAACAACGCTAAGCATTGGAACAGCATTAGAAGCTGTCTTTAT 479 Query 421 GAGAGCAAGTTCTGTTCTAACTTGGAGTTA-TACGCTGCTCGTGAGC-CTGTTTCTGCTT 478 |||||||||||||||| ||||||||||||| | | ||||| | | | ||||||||| || Sbjct 480 GAGAGCAAGTTCTGTTATAACTTGGAGTTAGT-CACTGCTAATCA-CACTGTTTCTGATT 537 Query 479 TCTACAAAGAGGATCTCACTCCTCTTGAGTCTGGTTGCTGCAAGCCCTCTAATGACTGTA 538 |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 538 TCTACAAAGAAGATCTCACTGCTTTTGAGTCTGGTTGCTGCAAGCCCTCTAATGACTGTG 597 Query 539 ACTTCATCTACATAAATGCAACAAGTTGGAACAAAACATCAGGAACACA-AAAGAACTCA 597 |||||| |||||||| | |||||| |||||| ||||||||||||||||| ||| |||||| Sbjct 598 ACTTCACCTACATAACTTCAACAACTTGGAATAAAACATCAGGAACACATAAA-AACTCA 656 Query 598 GATTGCCAACTTTGGGACAACGAAAAGGATAAGCTTTGCTACAATTGCCAAGCATGCAAG 657 ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| Sbjct 657 GATTGCCAACTTTGGGACAACGAAAAGCATAAGCTTTGCTACAATTGCAAAGCCTGCAAG 716 Query 658 GCTGGTTTTCTCGACAACCTCAAGAGCT-CATGGAAAAGAGTTGCTATTGTCAACATCAT 716 || ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 717 GCCGGTTTTCTCGACAACCTCAAG-GCCGCATGGAAAAGAGTTGCTATTGTCAACATCAT 775 Query 717 TTTCCTTGTACTCCTCATTATCGTCTACGCTATGGGATGTTGCGCCTTCCGAAACAACAA 776 |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| Sbjct 776 TTTCCTTGTACTCCTCGTTGTCGTCTACGCTATGGGATGTTGCGCTTTCCGAAACAACAA 835 Query 777 AGAAGATAGTTATGCCCGTTCCAATGGTTTCAACAATCCTTGA 819 ||||||||| |||| |||||||||||||||||||||| ||||| Sbjct 836 AGAAGATAGATATGGCCGTTCCAATGGTTTCAACAATTCTTGA 878 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5