BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328678

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30380.1 | Symbols:  | Barwin-related endoglucanase | chr4:1...   490    4e-138


> AT4G30380.1 | Symbols:  | Barwin-related endoglucanase | chr4:14860486-14860994 
FORWARD LENGTH=372
Length=372

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 344/380 (91%), Gaps = 13/380 (3%)
 Strand=Plus/Plus

Query  1    ATGAGTAAAAAgt-ttttggttttttctaccgttcttgtttttctcttctctttATCATA  59
            |||||| |||||| || || |||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGAGT-AAAAGTATTGTGTTTTTTTCTACCGTTCTTGTTTTTCTCTTCTCTTTCTCATA  59

Query  60   TGCAACTCCCGGAATTACAACTTTCTACACAAGTTATACTCCATCGGCATGTTACAGAGG  119
            |||||||||||| ||| ||||||| |||||||| | |||  | ||  |||||||||||||
Sbjct  60   TGCAACTCCCGGGATTGCAACTTTTTACACAAG-T-TAC-AC-TC--CATGTTACAGAGG  113

Query  120  TACGC---AAGGAGTGATGATAGCTGCAGCAAGTGAT-CGATTATGGAACAATGGTCGAG  175
            ||| |   ||||||||||||| |||||||| |||||| | ||||||| ||||||||||||
Sbjct  114  TACTCAAGAAGGAGTGATGATCGCTGCAGCGAGTGATAC-ATTATGGGACAATGGTCGAG  172

Query  176  TTTGTGGCAAAATGATCACAGTGAAATGCACCGGACCTCGTAACGCCGTGCCTCATCCTT  235
            |||||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct  173  TTTGTGGCAAAATGTTCACCGTGAAATGCAGCGGACCTCGTAACGCCGTGCCTCACCCTT  232

Query  236  GCACTGGGAAATCCATGACGGTCAAAATTGTTGACCATTGTCCCAGTAGCTGTGCTTCTA  295
            |||| ||||||||| ||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct  233  GCACGGGGAAATCCGTGAAGGTCAAGATCGTTGACCATTGTCCCAGTGGCTGTGCTTCTA  292

Query  296  CGCTCGATCTTTCCCGAGAAGCTTTTGCTCAGATCGCTAATCCTGTCGCTGGGATTATTA  355
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  CGCTCGATCTTTCTCGAGAAGCTTTTGCTCAGATCGCTAATCCTGTCGCTGGGATTATTA  352

Query  356  ACATTGATTATATTCCGTAA  375
            ||||||||||| ||||||||
Sbjct  353  ACATTGATTATTTTCCGTAA  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5