BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328739
Length=2328
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing p... 2348 0.0
> AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14573177 FORWARD LENGTH=2741
Length=2741
Score = 2348 bits (1271), Expect = 0.0
Identities = 1350/1389 (97%), Gaps = 2/1389 (0%)
Strand=Plus/Plus
Query 933 TGTAGAGGCAAGGGATTACGTACCTGAGGATGCAAATTACCCCAAGAATGTACCTAAAGA 992
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 1062 TGTAGAGGCAAGGGATTACGTACAAGAGGATGGGAATTACCCGAAGAATGTACCTAAAGA 1121
Query 993 ACAATTATCCGAGCTATGTGAATTGAATGATTTGTTGGAGGAGCTTGGTCCAAGGTTTCA 1052
|||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||
Sbjct 1122 ACAATTATCCGAGCTATGTGAACTGAATGATTTGCTGGACGAGGTTGGTCCAAGGTTTCA 1181
Query 1053 TGATTGGACAGGGTGTGCTCCGTTTCCTGTTGATGCAGACTTGCTTCCTGGATACGTTGA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TGATTGGACAGGGTGTGCTCCGTTTCCTGTTGATGCAGACTTGCTTCCTGGATACGTTGA 1241
Query 1113 AGGATATAGGTGTCCGTTTAGGATTCTTCCGCAAGGAGTAAAACCTTGTTTGTCTAACAC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 AGGATATAGGTGTCCGTTTAGGATTCTTCCGCAAGGAGTAAAACCTTGTTTGTCTAACAC 1301
Query 1173 AGAAATGACAGAAATGCGTCGGCTTGCTAGGACAAGCCCTCCACATTTTGCTCTGGGGAG 1232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GGAAATGACAGAAATGCGTCGGCTTGCTAGGACAAGCCCTCCACATTTTGCTCTGGGGAG 1361
Query 1233 GAGCAGAGAGTTACAAGGTCTGGCTAAGGCAATGGTAAAGCTATGGGCAAAAAGTGCGAT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GAGCAGAGAGTTACAAGGTCTGGCTAAGGCAATGGTAAAGCTATGGGCAAAAAGTGCGAT 1421
Query 1293 CGCCAAAATAGCAATCAAACGCGGTGTAGAAAATACGCGGAATGAGAGAATGGCGGAAGA 1352
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1422 CGCCAAAATAGCAATCAAACGCGGTGTAGAAAATACGCGGAATGAGAGAATGGCAGAAGA 1481
Query 1353 ACTTAAGAGACTTACTCGCGGTGTACTTGTTTCGAGAAACAAGGAGTATATTGTCTTCTA 1412
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 ACTTAAGAGACTTACCCGCGGTGTACTTGTTTCGAGAAACAAGGAGTATATTGTCTTCTA 1541
Query 1413 CAGAGGTAATGACTTCATGCCTCCTGCAGTGGTAGAGGCATTGACCGAGAGGCAAAAGGA 1472
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1542 CAGAGGTAATGACTTCATGCCTCCTGCAGTGGCAGAGGCATTGACCGAGAGGCAAAAGGA 1601
Query 1473 GATAACGGAAGTTCTTCAAATCAAGGAGGATCAAGCCCGGGAAATGGCTTCAACAAGAGT 1532
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1602 GATAACAGAAGTTCTTCAAGCCAAGGAGGATCAAGCCCGGGAAATGGCTTCAACAAGAGC 1661
Query 1533 CACACTCACATCACAAGCCAAATCGCCTAAAACCCAATTACTCGCTGGAACGCTTGCTGA 1592
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1662 CACACTCACATCACAAGCCAAATCGCCTAAAACCCAATTACTCGCTGGAACTCTTGCTGA 1721
Query 1593 GACTATAGCTGCAAGTTCTCGGTGGGCACCAGATGCAAGCAGCGTTGATATTGAAGAGTT 1652
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1722 GACTATAGCTGCAAGTTCTCGGTGGGCACCAAATGCAAGCAGCGTTGATATTGAGGAGTT 1781
Query 1653 AAAGAGAGAATCAGCTTCCATCAAAAGAGCTGCATTGATTAGAGATCTTGAGCTAAGGCT 1712
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1782 AAAGAGAGAATCAGCTTCCATCAAAAGAGCTGCATTGATTAGAGATCTCGAGCTAAGGCT 1841
Query 1713 TCTTTATGGAAAGCAAAAGTTGAGAAGAGCTGAGAGAGATTTAGCTAAAGTGCAGAAGGA 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 TCTTTATGGAAAGCAAAAGTTGAGAAGAGCTGAGAGAGATTTAGCTAAAGTGCAGAAGGA 1901
Query 1773 TCTTGACCCATCAGAACTCCCAACTGATTCAGAAATAATCACAGAAGAAGAGAGACTTCT 1832
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 TCTTGACCCATCGGAACTCCCAACTGATTCAGAAATAATCACAGAAGAAGAGAGACTTCT 1961
Query 1833 TTACCGCAAAATTGGTTTGAGTATGGATCCGTTTCTTCTCTTAGGAAGACGAGAAGTGTA 1892
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1962 TTACCGCAAAATTGGTTTGAGTATGGATCCGTTTCTTCTCTTAGGAAGACGAGAGGTGTA 2021
Query 1893 TGATGGTACCATAGAGAACATGCATCTACACTGGAAACATCGGGAGCTTGTAAAAGTGAT 1952
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2022 TGATGGTACCATAGAGAACATGCATTTACACTGGAAACATCGGGAGCTTGTAAAAGTGAT 2081
Query 1953 AGTTAGAGGCAAATCTCTTCCGCAAGTCAAACATATCTCTATCTCTTTGGAGGCTGAGAG 2012
||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 2082 AGTTAGAGGCAAATCTCTTCCACAAGTCAAACATATCGCCATCTCTTTGGAGGCTGAGAG 2141
Query 2013 TGGCGGAGTATTGGTATCCGTTGATAAAACTATAAAAGGCTATGCGATTATACTCTATCG 2072
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2142 TGGAGGAGTATTGGTATCCGTTGATAAAACCATGAAAGGCTATGCGATTATACTCTATCG 2201
Query 2073 CGGAAAGAATTATCAGATGCCATTTCGGCTTAGGCCTTCAAACTTATTGACGAGAAAAAA 2132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2202 CGGAAAGAATTATCAGATGCCATTTCGGCTTAGGCCTTCAAACTTATTGACGAGAAAAAA 2261
Query 2133 GGCTTTTGCTCGATCCATTGAGCTTCAAAGAAGAGAAGCACTGAAGTATCATGTTGCAGA 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 GGCTTTTGCTCGATCCATTGAGCTTCAAAGAAGAGAAGCACTGAAGTATCATGTTGCAGA 2321
Query 2193 CCTAGAGGAACGGATAGAGCTGCTGAAGACCGGACAGGATGACGATAGGGAA-CCCGGCA 2251
||||||||||||||| |||||| |||||||||||||||| ||||||| |||| |||| ||
Sbjct 2322 CCTAGAGGAACGGATTGAGCTGTTGAAGACCGGACAGGACGACGATATGGAAACCCG-CA 2380
Query 2252 AGAAAAGTGATGGAGAGGAAGAAAACTTGTATTTGAGAGTCGATGAATCTGATTTTTCTT 2311
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2381 ACAAAAGTGATGAAGAGGAAGAGAACTTGTATTTGAGAGTCGATGAATCTGATTTTTCTT 2440
Query 2312 CTGACGAGG 2320
|||||||||
Sbjct 2441 CTGACGAGG 2449
Score = 1378 bits (746), Expect = 0.0
Identities = 871/929 (94%), Gaps = 18/929 (2%)
Strand=Plus/Plus
Query 1 ATGGCGCTGTGTCAATTCCCACTGAATCTTCACACTATCTCCTCATCAACATCTTCGTCT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGCTTTGTCAATTCCCACTGAATCTTCACACTATCTCCTCATCAACATCTTCATCT 60
Query 61 CCTCAATTCCGTCGTCTTCAACCTCTAGAGT-CCTCTATAAAGCCTAATTTCCTTATTCG 119
|||| |||||||||||||||||||||||| | |||||| |||||| ||||| ||||||||
Sbjct 61 CCTCGATTCCGTCGTCTTCAACCTCTAGA-TACCTCTACAAAGCCCAATTTTCTTATTCG 119
Query 120 TAGACTCAGATTTCGTAGCTTCAATCACCCAATTCGGTTTCACACCCTTGAATTGAGTGT 179
|||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 120 TAGACTCAGATTTCATAGCTTCAATCACCCAGTTCGGTTTCACACCCGAGAATTGAGTGT 179
Query 180 CATCAGAGCCACCATTGATATCGACACTCACCAGAGGAAGAAGACGAAGAGAAAACCTAA 239
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATCACAGCCACCATTGACATCGACACTCACCAGAGGAAGAAGACGAAGAGAAAACCTAA 239
Query 240 ACCGGGTTTTTTCGAAGAAATTAGCGATAAATGGTCTTCACGTATCAGCCCTAAAACCGA 299
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 240 ACCAGGTTTTTTCGAAGAAATTAGTGATAAATGGTCTTCACGTATCAGCCCCAAAACCGA 299
Query 300 GAAATTGCCATGGCAGAAGCAAGAAGAGCAAATTCAACATCAC----A--AAGACGAT-- 351
||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 300 GAAATTGCCATGGCAGAAGCAAGAAGAGCAAATTCAACATCACGAAGACGAAGAAGATGA 359
Query 352 ----GGAGATGAATCAAGATCAAATCTTTCTTCTGGGTATGGTTTATCTGATAAGAGAAC 407
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 GGAAGGAGATGAATCAAGTTCAAATCTTTCTTCTGGGAATGGTTTATCTGATAAGAGAAC 419
Query 408 CGATTCCAATCGCCTCTATTCAGCGAATGAGCCGTCGACTTTCCCAAGACCAAGCGGATA 467
|||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 420 CGATTCCAATCGTCTCTATTCGGCGAATGAGCCGTGGAGTTTCCCAAGACCAAGCGGATA 479
Query 468 CATGTCTGCTCCATGGGTTAACAATGGTGGGTCTAAAGGTGTTAACTTTACGACTAGCTT 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATGTCTGCTCCATGGGTTAACAATGGTGGGTCTAAAGGTGTTAACTTTACGACTAGCTC 539
Query 528 CGAGCAAGGAGTTGAAAGTTCGAGTTTTGATGATGTTATTACGGTAGATAGATATAGAAG 587
|||||||||| || |||||||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 540 CGAGCAAGGAATTCAAAGTTCGAGTTTTCACGATGTTACTACTGTAGATAGATATAGAAG 599
Query 588 GGATAACGATTCTAGTAATAGAGGTGTAGATTCAGATTTAGATGATGGTGAAAGAGGGAT 647
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 GGATAACGATTCTAGCGATAGAGCTGTAGATTCAGATTTAGATGATGGTGAAAGAGGGAT 659
Query 648 GATAGATTCAGGGAA-AGATAAGGGAATATGGAGAACGAGGAGGAGTAATACGGTAGAAG 706
||||||||||||||| | |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 660 GATAGATTCAGGGAATA-ATAAGGGAATATGGAGAACGAGGAAGAGTAATACAGTAGAAG 718
Query 707 CTGAGAGGGTTGTACCGGAACATGAGCTGAGAAGGTTGAGGAATGTAGCTTTGAGAATGG 766
|||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 CTGAGAGGATTGTACCAGAACATGAGCTGAAAAGGTTGAGGAATGTAGCTTTGAGAATGG 778
Query 767 TTGAGAGAGTAAAAGTAGGTTCTGCAGGAATTACGCAGGCG-TTAGTTGAAGCTATTCAT 825
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 779 TTGAGAGAGTAAAAGTAGGTTCTGCAGGAATTACGCAGGCGCTT-GTTGAAGCTATTCAT 837
Query 826 GAGAAATGGGAGGTTGATGAAGTTGTGAAGTTGAAATTTGGAGAGCCTTTTTCTCTTAAT 885
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 838 GAGAAATGGGAGGTTGATGAAGTTGTGAAGTTGAAATTTAGTGAGCCTTATTCTCTTAAT 897
Query 886 ATGAAGAGAACTCATGAAGTTTTGGAGAA 914
|||||||||||||||||||||||||||||
Sbjct 898 ATGAAGAGAACTCATGAAGTTTTGGAGAA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115561654590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5