BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328753
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29580.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 793 0.0
> AT4G29580.2 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14510147-14512186 FORWARD LENGTH=1338
Length=1338
Score = 793 bits (429), Expect = 0.0
Identities = 741/885 (84%), Gaps = 48/885 (5%)
Strand=Plus/Plus
Query 24 TCTCGCTCCAA-ATGAAACAGAATTCTCCGGTGATTTC-ACCACCGAAACCATTATGCCG 81
|||| |||||| | ||| |||||| |||||| |||| | | |||||||| || |||||
Sbjct 30 TCTCACTCCAACA-GAAGCAGAATCCTCCGGCCCTTTCGAGC-CCGAAACCCTTTTGCCG 87
Query 82 CTGATCAATCGTGCGCTTCCACTCGCTC-GTACTCTAAACC-CGCAGTTACCCCGCGTAG 139
||||||||||| |||||||||||||||| | |||| | || |||||| ||||| |||||
Sbjct 88 CTGATCAATCGGGCGCTTCCACTCGCTCAG-GCTCT-ACCCTCGCAGTCACCCCTCGTAG 145
Query 140 TCGTGGGCCGAGGATCCTCAGGTCGGACCTTCTTAGGCGTCAATGTGGACTTACGAGGTC 199
||| ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 146 CCGTCGGCCGAGGATCATCAGGTCGGACCTTCTTAGGCGTCAATGTGGAATTACCAGGTT 205
Query 200 TGCCTCTTCACCACTCTATCCACGCCGAGCAGTTCCTTGTCGTCAACCTCGCCCTCCACA 259
|| ||| || |||||| |||||||||| |||||||||||||||| | ||||||||| |||
Sbjct 206 TGTCTCCTCTCCACTCCATCCACGCCGGGCAGTTCCTTGTCGTCCATCTCGCCCTCAACA 265
Query 260 ACGAGCGAAAACTCAACTGCTTAGCCATCTCCGCTGGCGGCACCTTCTTCTACGCGCCAT 319
||||||||| |||||||||||||||| ||||| | |||| ||| |||| || | ||||
Sbjct 266 ACGAGCGAACACTCAACTGCTTAGCCTTCTCCTCAAACGGCTCCTACTTCGACCCTCCAT 325
Query 320 G-CGGCCACTGCTGCCA-CTTTCTTCAAGAAATCCGAGATGCGTCTAATACCCAAA-TCT 376
| | |||||||||||| ||| ||||||||||||||| ||||||||| |||| ||| |||
Sbjct 326 GTCC-CCACTGCTGCCAACTT-CTTCAAGAAATCCGAAATGCGTCTAGTACC-AAACTCT 382
Query 377 TGATCACGGACCCATTATTCCGCCAGAACTCCATGCCTCTTTCGACCTTCCTTCCGCAAA 436
||||||||||||||| ||||||| | |||| |||||||||||| |||||||||||
Sbjct 383 TGATCACGGACCCATC---CCGCCAGCGCGACATGTCTCTTTCGACCTACCTTCCGCAAA 439
Query 437 AATATTTCTCCGTCTACAATGAGGTCCCGGAATACTTC---GCTCGCCTTCTCGACCACA 493
||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||| | |
Sbjct 440 AATATTTGTCCCTCTACAATGAGGTCCCGAAATACTTCTTCGCTCGCCTTCTCGACGAAA 499
Query 494 ATCGCCGTAACGGCCTCACCCTCATTGATCCCAATCCCATCAGAGAGATCTGCGTTA-AT 552
||||| ||||||||||||||||||| ||||||||||||||||||| |||| | | ||
Sbjct 500 ATCGCAATAACGGCCTCACCCTCATTAATCCCAATCCCATCAGAGA---CTGCCT-AGAT 555
Query 553 TCCGACAGTTGTACCCATCTAAAG-TGCAGGGCTCTAAACGCGGCTAACCGATCGTACGC 611
||||| | ||||| |||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 556 TCCGAAATTTGTAACCATCTAA-GCTGCAGGGCTCTAAAGGCGGCTAACCGATCGTACGC 614
Query 612 GCCGTATAGCAATTGTTCGTCTGGAGTGGCGCTGATGGATCACCAAGGGAAAGTGTACAG 671
|||||||||||| | | |||||||||||||||| |||||| ||||||| |||||||||
Sbjct 615 GCCGTATAGCAAGTCTCCGTCTGGAGTGGCGCTCATGGATTTTCAAGGGAGAGTGTACAG 674
Query 672 CGGATGGTA-CATGGAATCTGTGGCGTATAACCCTAT---------A-CA-A-GCTGCAC 718
|||||| | ||| |||||||||||| | | |||||| | || | |||||||
Sbjct 675 TGGATGG-AGCATTGAATCTGTGGCG-A-A-CCCTATTTTGGGGGCAGCACAAGCTGCAC 730
Query 719 TGGTTGACTTCGTGACTAATGGTGGCGGTCACGAGTTCGATAAGATAGTCCAAGCGGTG- 777
||||||||||| |||||||||||||||| ||||||||| |||| ||||||| || |||
Sbjct 731 TGGTTGACTTCATGACTAATGGTGGCGGCCACGAGTTCAATAACATAGTCCGAG-GGTTT 789
Query 778 CTGGTGGAGAAGAGAGTTGCGAAGTTTAGTCAAGTGGCCAGGGCGAGGAATATTATTAAG 837
|||||||||||||||| ||||||||| ||||| |||||| ||||||| | ||| | ||
Sbjct 790 CTGGTGGAGAAGAGAGATGCGAAGTTGAGTCACTTGGCCACGGCGAGGGAGATTCTAAAT 849
Query 838 AAGATAGCCCACGACAGCTGCGTTTT-CAAAGTCTTACATTTCCA 881
||| |||||||| ||||| | |||| | |||||||||| |||
Sbjct 850 AAGGTAGCCCACTTCAGCTTCATTTTACGT-GTCTTACATTGCCA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5