BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg328753 Length=906 Score E Sequences producing significant alignments: (Bits) Value AT4G29580.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 793 0.0 > AT4G29580.2 | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr4:14510147-14512186 FORWARD LENGTH=1338 Length=1338 Score = 793 bits (429), Expect = 0.0 Identities = 741/885 (84%), Gaps = 48/885 (5%) Strand=Plus/Plus Query 24 TCTCGCTCCAA-ATGAAACAGAATTCTCCGGTGATTTC-ACCACCGAAACCATTATGCCG 81 |||| |||||| | ||| |||||| |||||| |||| | | |||||||| || ||||| Sbjct 30 TCTCACTCCAACA-GAAGCAGAATCCTCCGGCCCTTTCGAGC-CCGAAACCCTTTTGCCG 87 Query 82 CTGATCAATCGTGCGCTTCCACTCGCTC-GTACTCTAAACC-CGCAGTTACCCCGCGTAG 139 ||||||||||| |||||||||||||||| | |||| | || |||||| ||||| ||||| Sbjct 88 CTGATCAATCGGGCGCTTCCACTCGCTCAG-GCTCT-ACCCTCGCAGTCACCCCTCGTAG 145 Query 140 TCGTGGGCCGAGGATCCTCAGGTCGGACCTTCTTAGGCGTCAATGTGGACTTACGAGGTC 199 ||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| Sbjct 146 CCGTCGGCCGAGGATCATCAGGTCGGACCTTCTTAGGCGTCAATGTGGAATTACCAGGTT 205 Query 200 TGCCTCTTCACCACTCTATCCACGCCGAGCAGTTCCTTGTCGTCAACCTCGCCCTCCACA 259 || ||| || |||||| |||||||||| |||||||||||||||| | ||||||||| ||| Sbjct 206 TGTCTCCTCTCCACTCCATCCACGCCGGGCAGTTCCTTGTCGTCCATCTCGCCCTCAACA 265 Query 260 ACGAGCGAAAACTCAACTGCTTAGCCATCTCCGCTGGCGGCACCTTCTTCTACGCGCCAT 319 ||||||||| |||||||||||||||| ||||| | |||| ||| |||| || | |||| Sbjct 266 ACGAGCGAACACTCAACTGCTTAGCCTTCTCCTCAAACGGCTCCTACTTCGACCCTCCAT 325 Query 320 G-CGGCCACTGCTGCCA-CTTTCTTCAAGAAATCCGAGATGCGTCTAATACCCAAA-TCT 376 | | |||||||||||| ||| ||||||||||||||| ||||||||| |||| ||| ||| Sbjct 326 GTCC-CCACTGCTGCCAACTT-CTTCAAGAAATCCGAAATGCGTCTAGTACC-AAACTCT 382 Query 377 TGATCACGGACCCATTATTCCGCCAGAACTCCATGCCTCTTTCGACCTTCCTTCCGCAAA 436 ||||||||||||||| ||||||| | |||| |||||||||||| ||||||||||| Sbjct 383 TGATCACGGACCCATC---CCGCCAGCGCGACATGTCTCTTTCGACCTACCTTCCGCAAA 439 Query 437 AATATTTCTCCGTCTACAATGAGGTCCCGGAATACTTC---GCTCGCCTTCTCGACCACA 493 ||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||| | | Sbjct 440 AATATTTGTCCCTCTACAATGAGGTCCCGAAATACTTCTTCGCTCGCCTTCTCGACGAAA 499 Query 494 ATCGCCGTAACGGCCTCACCCTCATTGATCCCAATCCCATCAGAGAGATCTGCGTTA-AT 552 ||||| ||||||||||||||||||| ||||||||||||||||||| |||| | | || Sbjct 500 ATCGCAATAACGGCCTCACCCTCATTAATCCCAATCCCATCAGAGA---CTGCCT-AGAT 555 Query 553 TCCGACAGTTGTACCCATCTAAAG-TGCAGGGCTCTAAACGCGGCTAACCGATCGTACGC 611 ||||| | ||||| |||||||| | |||||||||||||| |||||||||||||||||||| Sbjct 556 TCCGAAATTTGTAACCATCTAA-GCTGCAGGGCTCTAAAGGCGGCTAACCGATCGTACGC 614 Query 612 GCCGTATAGCAATTGTTCGTCTGGAGTGGCGCTGATGGATCACCAAGGGAAAGTGTACAG 671 |||||||||||| | | |||||||||||||||| |||||| ||||||| ||||||||| Sbjct 615 GCCGTATAGCAAGTCTCCGTCTGGAGTGGCGCTCATGGATTTTCAAGGGAGAGTGTACAG 674 Query 672 CGGATGGTA-CATGGAATCTGTGGCGTATAACCCTAT---------A-CA-A-GCTGCAC 718 |||||| | ||| |||||||||||| | | |||||| | || | ||||||| Sbjct 675 TGGATGG-AGCATTGAATCTGTGGCG-A-A-CCCTATTTTGGGGGCAGCACAAGCTGCAC 730 Query 719 TGGTTGACTTCGTGACTAATGGTGGCGGTCACGAGTTCGATAAGATAGTCCAAGCGGTG- 777 ||||||||||| |||||||||||||||| ||||||||| |||| ||||||| || ||| Sbjct 731 TGGTTGACTTCATGACTAATGGTGGCGGCCACGAGTTCAATAACATAGTCCGAG-GGTTT 789 Query 778 CTGGTGGAGAAGAGAGTTGCGAAGTTTAGTCAAGTGGCCAGGGCGAGGAATATTATTAAG 837 |||||||||||||||| ||||||||| ||||| |||||| ||||||| | ||| | || Sbjct 790 CTGGTGGAGAAGAGAGATGCGAAGTTGAGTCACTTGGCCACGGCGAGGGAGATTCTAAAT 849 Query 838 AAGATAGCCCACGACAGCTGCGTTTT-CAAAGTCTTACATTTCCA 881 ||| |||||||| ||||| | |||| | |||||||||| ||| Sbjct 850 AAGGTAGCCCACTTCAGCTTCATTTTACGT-GTCTTACATTGCCA 893 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44256283507 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5