BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328774

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29340.1 | Symbols: PRF4 | profilin 4 | chr4:14447647-144486...   649    0.0  


> AT4G29340.1 | Symbols: PRF4 | profilin 4 | chr4:14447647-14448698 
FORWARD LENGTH=707
Length=707

 Score =  649 bits (351),  Expect = 0.0
 Identities = 388/406 (96%), Gaps = 2/406 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGTGGCAAACTTACGTTGATGAACATTTGATGTGTGATGTTGGCGATGGTCAAGGA  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  72   ATGTCGTGGCAAACTTACGTTGATGAGCATTTGATGTGTGATGTTGGCGATGGTCAAGGA  131

Query  61   CACCACCTTACCGCTGCTGCTATCGTTGGTCATGATGGTAGCGTTTGGGCTCAGAGCTCC  120
            ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  132  CACCACCTTACTGCTGCCGCTATCGTTGGTCATGACGGTAGCGTTTGGGCTCAGAGCGCC  191

Query  121  AACTTTCCTCAGTTCAAGGGACAGGAGTTCAGTGATATAATGAAAGATTTCGATGAACCG  180
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  192  AACTTCCCTCAGTTCAAGGGACAGGAGTTCAGTGATATTATGAAAGATTTCGACGAACCG  251

Query  181  GGTCACTTGGCACCAACAGGG-TTATTCCTAGCAGGAGCTAAGTACATGGTTATCCAAGG  239
            |||||||||||||| || ||| |||||| | |||||||| ||||||||||| ||||||||
Sbjct  252  GGTCACTTGGCACCCAC-GGGATTATTCATGGCAGGAGCAAAGTACATGGTGATCCAAGG  310

Query  240  CGAGCCCGGGGCTGTAATCCGTGGCAAGAAGGGAGCAGGAGGCATAACGATAAAGAAAAC  299
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  311  TGAGCCCGGGGCTGTAATCCGTGGCAAGAAGGGAGCAGGAGGCATAACGATAAAGAAAAC  370

Query  300  AGGACAGTCATGTGTGTTTGGGATCTACGAAGAGCCAGTGACACCAGGACAGTGCAACAT  359
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  371  AGGACAGTCATGTGTGTTTGGGATCTATGAAGAGCCAGTGACACCAGGACAGTGCAACAT  430

Query  360  GGTCGTCGAAAGGTTGGGTGATTACCTCCTCGAACAGGGTCTCTAG  405
            ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  431  GGTCGTCGAGAGGTTGGGTGATTACCTCCTCGAACAGGGTCTCTAG  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5