BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328779
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29290.1 | Symbols: LCR26 | low-molecular-weight cysteine-ri... 383 4e-106
AT4G29305.1 | Symbols: LCR25 | low-molecular-weight cysteine-ri... 267 4e-71
> AT4G29290.1 | Symbols: LCR26 | low-molecular-weight cysteine-rich
26 | chr4:14432741-14433084 REVERSE LENGTH=234
Length=234
Score = 383 bits (207), Expect = 4e-106
Identities = 225/234 (96%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGTTATCATGTTCTTATTTCCTTGTACTCATGCTTGTGTGCTCAGCTTTTTTA 60
||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||
Sbjct 1 ATGGCCAAGTTATCATGTTCTTATTTCTTTATACTCATGCTTGTGTTCTCAGCTCTTTTA 60
Query 61 ATGGTTGAATGTGATGAGGGGAAGCGATGTCATACGACGATTGACTAGGCAAATTTTTGT 120
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 61 ATGGTTGAATGTGATGAGGGGAAGCGATGCCATACGACGATTGACAAGGGAAATTTTTGT 120
Query 121 GATCTTGTCGATTGTCGTTTAAGCTGCTTTTCTGGATACAATGGAGTTGGAAAATGTTTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GATCTTGTCGATTGTCGTTTAAGCTGCTTTTCTGGATACAATGGAGTTGGAAAATGCTTT 180
Query 181 GACGATCCTAAAGTTCCTGGACGTTCTAATTGTGGTTGTCTATATAATTGTTAG 234
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GACGATCCTAAAGTTCCTGGACGTTCTAATTGTGGTTGTCTATACAATTGTTAG 234
> AT4G29305.1 | Symbols: LCR25 | low-molecular-weight cysteine-rich
25 | chr4:14436284-14436631 REVERSE LENGTH=234
Length=234
Score = 267 bits (144), Expect = 4e-71
Identities = 207/237 (87%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 1 ATGGCCAAGTTATCATGTTCTTATTTCCTTGTACTCATGCTTGTGTGCTCAGCTTTTTTA 60
||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1 ATGGCGAAGTTATCATGTTCTTATTTCCTTGTACTCATTCTTGTGTTCTCAGCTTTTTTA 60
Query 61 ATGGTTGAATGTGATGAGGGGAAGCGATGTCATACGACGATTGACTAGGCAAATTTTTGT 120
||||||||| | | |||||| |||||||||||| |||||||||| | |||| | |||
Sbjct 61 ATGGTTGAAAGAGCTGAGGGAAAGCGATGTCATTTGACGATTGACAAAGCAACTGCGTGT 120
Query 121 GA-TCTT-GTCGATTGTCGTTTAAGCTGCTT-TTCTGGATACAATGGAGTTGGAAAATGT 177
| |||| | |||||| ||||||||||| || | |||||| ||||||||||||||||||
Sbjct 121 -AGTCTTAG-CGATTGCCGTTTAAGCTG-TTATAGTGGATATAATGGAGTTGGAAAATGT 177
Query 178 TTTGACGATCCTAAAGTTCCTGGACGTTCTAATTGTGGTTGTCTATATAATTGTTAG 234
|||||||||||||||||| |||||| |||||| ||||||||| | ||||||||||||
Sbjct 178 TTTGACGATCCTAAAGTTGCTGGACCTTCTAACTGTGGTTGTATCTATAATTGTTAG 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5