BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328786
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29230.1 | Symbols: anac075, NAC075 | NAC domain containing ... 2551 0.0
> AT4G29230.1 | Symbols: anac075, NAC075 | NAC domain containing
protein 75 | chr4:14410338-14414956 FORWARD LENGTH=1497
Length=1497
Score = 2551 bits (1381), Expect = 0.0
Identities = 1459/1497 (97%), Gaps = 3/1497 (0%)
Strand=Plus/Plus
Query 1 ATGAACAAGAGTAATCCTGCTGGCTCGGTGACTGGTTCGGATATAATCGACGCAAAGATC 60
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGAACAAGAGTAATCCTGCTGGTTCGGTGACTGGTTCGGATATAATAGACGCCAAGATC 60
Query 61 GAAGAACATCAACTTTGTGGATCCAAGAAGTGTCCTAGCTGCGGCCACAAGCTCGAAGGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAACATCAACTTTGTGGATCCAAGAAGTGTCCTAGCTGCGGCCACAAGCTCGAAGGC 120
Query 121 AAACCACAGGATTGGGTTGGTTTACCAGCAGGAGTGAAATTTGACCCAACGGATCAAGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACCACAGGATTGGGTTGGTTTACCAGCAGGAGTGAAATTTGACCCAACGGATCAAGAA 180
Query 181 TTGATAGAACATTTAGAAGCGAAAGTCTTAGCTAAAGACTTTAAATCTCACCCTCTCATT 240
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 TTGATAGAACATTTAGAAGCGAAAGTGTTAGCTAAAGACTTCAAATCTCACCCTCTCATT 240
Query 241 GACGAATTCATCCCAACCATTGAAGGCGAAGACGGCATTTGCTACACTCACCCCGAGAAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GACGAATTCATCCCAACCATTGAAGGCGAAGACGGCATTTGCTACACTCATCCCGAGAAA 300
Query 301 CTTCCTGGAGTGACTAGAGATGGTTTAAGCCGGCACTTCTTTCATAGACCATCAAAGGCG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CTTCCTGGAGTGACTAGAGATGGTTTAAGCCGACACTTCTTTCATAGACCATCAAAGGCG 360
Query 361 TACACGACGGGAACAAGAAAGCGAAGAAAGATACAAACGGAATGTGACAATAATCTGCAA 420
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 361 TACACGACGGGAACAAGAAAGCGAAGAAAGATTCAAACAGAATGTGACAATAATTTGCAA 420
Query 421 GGAAGTAGAAGCTCCGGTGAGACGAGGTGGCATAAGACCGGTAAGACAAGACCGGTTATG 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAAGTAGTAGCTCCGGTGAGACGAGGTGGCATAAGACCGGTAAGACAAGACCGGTTATG 480
Query 481 GTAAACGGTAAGCAAAAAGGTTGTAAGAAGATTTTGGTTTTGTATACCAATTTTGGAAAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GTAAACGGTAAGCAAAAAGGTTGTAAGAAGATTTTGGTTTTGTATACCAATTTTGGTAAG 540
Query 541 AATCGAAAACCGGAGAAAACCAATTGGGTAATGCATCAATATCATTTGGGGACACATGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATCGAAAACCGGAGAAAACCAATTGGGTAATGCATCAATATCATTTGGGGACACATGAG 600
Query 601 GAAGAGAAAGAAGGAGAACTTGTTGTGTCTAAGATCTTTTATCAAACTCAGCCTAGGCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGAGAAAGAAGGAGAACTTGTTGTGTCTAAGATCTTTTATCAAACTCAGCCTAGGCAA 660
Query 661 TGCAACTGGTCGTCTTCTACATCGAGCTTGAACGCTTTAGGTGGTGGAGGCGGTGAAGCG 720
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 661 TGCAACTGGTCGTCTTCTACATCGAGCTTGAACGCTATAGGTGGTGGCGGCGGTGAAGCG 720
Query 721 AGTAGCGGCGGAGGCGGTGGAGAGTATCATATGAGGAGAGATAGTGGGACTACTAGTGGT 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTAGCGGCGGAGGCGGCGGAGAGTATCATATGAGGAGAGATAGTGGGACTACTAGTGGT 780
Query 781 GGGAGTTGTTCTTCGTCTAGAGAGATTATTAATGTTAATCCTCCAAATCGGTCCGATGAA 840
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 781 GGGAGTTGTTCTTCGTCTAGAGAAATTATTAATGTTAATCCTCCGAATCGATCCGATGAA 840
Query 841 ATAGGCGGTGTTGGTGGTGGCGTTATGGCCGTAGCAGCTGCCGCTGCGGCGGTTGCGGCT 900
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 841 ATAGGCGGCGTTGGTGGTGGCGTTATGGCCGTAGCAGCTGCGGCTGCGGCGGTTGCAGCT 900
Query 901 GGGCTTCCGAGTTATGCAATGGATCAACTCAGCTTTGTTCCGTTTATGAAAAGCTTTGAT 960
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 GGGCTTCCGAGTTATGCAATGGATCAGCTCAGCTTTGTTCCGTTTATGAAAAGCTTTGAT 960
Query 961 GAGGTGGCGAGGAGGGAAACTCCTCAGACCGGGCACGCTACATGTGAGGATGTAATGGCA 1020
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 GAGGTGGCGAGGAGGGAAACTCCTCAGACTGGGCACGCTACATGTGAGGATGTAATGGCA 1020
Query 1021 GAACAAcatcgtcatcgtcatcaagcatcatcatcagcatcacatcatatggctcatgat 1080
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1021 GAACAACATCGTCATCGTCATCAACCATCATCATCAACATCACATCATATGGCTCATGAT 1080
Query 1081 catcaccatcatcatcat---caacaacaacaacggcatcatgcattcaacataagccag 1137
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CATCACCATCATCATCATCAACAACAACAACAACGGCATCATGCATTCAACATAAGCCAG 1140
Query 1138 ccaacacatccaaTATCAACCATTATTTCTCCATCTACTTCGCTTCACCATGCCTCCATT 1197
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCTACACATCCGATATCAACCATTATTTCTCCATCTACTTCGCTTCACCATGCCTCCATT 1200
Query 1198 AATATCCTCGACGAGAATCCTTATCATGTTCATAGAATCATGCTCCCCAATGAAAATTAC 1257
||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1201 AATATTCTTGACGATAATCCTTATCATGTTCATAGAATCTTGCTCCCCAATGAAAATTAC 1260
Query 1258 CAGACACAACAGCAACAACGTCAAGATGGAGATGAAGAACATAATGATGGGAAGATGGGA 1317
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1261 CAGACACAACAGCAACTACGTCAAGAAGGAGAAGAAGAACATAATGATGGGAAGATGGGA 1320
Query 1318 GGAAGGTCAGCTTCTGGATTGGAAGAACTCATAATGGGCTGCACTTCTTCTACCACTCAT 1377
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGAAGGTCAGCTTCCGGATTGGAAGAACTCATAATGGGCTGCACTTCTTCTACCACTCAT 1380
Query 1378 CATGATGTAAAAGATGGGTCATCATCAATGGGGAACCAACAAGAAGCAGAATGGTTGAAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CATGATGTAAAAGATGGGTCATCATCAATGGGGAACCAACAAGAAGCAGAATGGTTGAAG 1440
Query 1438 TACTCAACGTTTTGGCCAGCCCCTGACTCTTCTGACAACCAAGATCATCATGGGTAA 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TACTCAACGTTTTGGCCAGCCCCTGACTCTTCTGACAACCAAGATCATCATGGGTAA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5